Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03862 ATGACTCATCTTCAAGACTTCTATCTCCAATTTAACAACTTCTCTCGTGCAATTCCTTCATCTATTGGGAACTGTACTAAGTTACAAGACTTGTATTTGAATGATAATCAGTTGAAGGTTGTTCTTCCTTACAGTCTCAACAATCTCAATCATCTTCTTAACTTTGATGTTGCCAACAATAAACTAACAGGTACTATTCCATTGAGTTTTTCTGGTTGTAGGAATTTACAGTTTTTGGATATTTCGTTCAATGATTTTGGTAGTGCCATTCCATATAGCATTGGTAATTGTACTGCTTTATCACAATTTGCCGCTGTGAAATCTAATTTGGTTGGAGCTATTCCATCTTCCATTGGTCTGCTCACCAAGCTTTCGATTCTACGCCTTTCGGAGAATCATTTGTCTGGAAAGATACCTTCTGAAATAGGTAACTGCAGGTCTTTGAATGAGTTGCATTTGTATTCCAATCGACTTGATGGAAAGATTCCAAAAGAATTGGGAAAACTCAGTGAATTAAGGGACCTTGAACTGTTTTCTAATCAATTGAGTGGTGAAATTCTGCTTGATATATGGAAGATTCGAAGTCTCGAGCATCTGTTTGTGTATAATAATATCCCTTCTGGTGAACTTCCTGTGGAGATGACAGAGCTCAAGAACTTTAAGAACATTTCATTGTTTAACAACATGTTCTCTGGGGTTATACCTCAAAGCTTGGGAATTAACAGCAGTCTGGTACAGTTGGACTTTGTGAATAACAGGTTCACTGGGAACCTCCCACCAAATCTTTGTTTTGGAAGAAAGTTGAGTGTTTTGAATATGGGAATCCCTTTACTCAAAGGAATGTATGGTGAATTCTCAGGTAGTTTAATGGTACAAATCGTTGTCCTTCAATGTATAATCTGGTATACTATGATGCTTTTCATGTTTGAGTTTCGAGGAGCAAGGTTGTTGATATCTGAACAGTTTCCAGACACTGCTGGAAACCACGACCATGATAATGGCGGCGAACAAAGTCCACGTGGCTCTTCTTCCGCTGCACGTGAGCAAGATCGTCTCTTGCCTATTGCTAACATTAGCAGGATCATGAAAAAGGCTTTGCCTTCCAATGGAAAGATTGCTAAGGATGCTAAAGATACAATGCAGGAATGTGTTTCCGAATTCATCAGTTTTATTACCAGCGAGGCGAGTGAGAAATGTCAGAAAGAGAAGAGAAAGACCATTAATGGAGACGATTTGTTATGGGCTATGGCTACTTTAGGATTTGAAGACTATATAGAACCGCTTAAGCTTCCCGCCCCTTGCACCGACCTAAGTTTTCTTTCCTTACGCATAAACTTCAATGATTCAAAGGAAATTTCAGCTGCTCTTTGCCTGCTCAGAAGCTCACCTAAGCTACGAGAACTAGAAATATTGGCACGGCCTGAGGAGCAGTCTGTTGCGCATTTGTGGGAAGAGGTCTATTTGGATTGGCCAGTCATGCGAGTACAACACTGA 1494 0.3976 MTHLQDFYLQFNNFSRAIPSSIGNCTKLQDLYLNDNQLKVVLPYSLNNLNHLLNFDVANNKLTGTIPLSFSGCRNLQFLDISFNDFGSAIPYSIGNCTALSQFAAVKSNLVGAIPSSIGLLTKLSILRLSENHLSGKIPSEIGNCRSLNELHLYSNRLDGKIPKELGKLSELRDLELFSNQLSGEILLDIWKIRSLEHLFVYNNIPSGELPVEMTELKNFKNISLFNNMFSGVIPQSLGINSSLVQLDFVNNRFTGNLPPNLCFGRKLSVLNMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTMMLFMFEFRGARLLISEQFPDTAGNHDHDNGGEQSPRGSSSAAREQDRLLPIANISRIMKKALPSNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKLPAPCTDLSFLSLRINFNDSKEISAALCLLRSSPKLRELEILARPEEQSVAHLWEEVYLDWPVMRVQH 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03862 497 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 89 - -
Vifa6g03862 497 SUPERFAMILY Histone-fold 349 430 IPR009072 GO:0046982
Vifa6g03862 497 Gene3D Histone, subunit A 339 431 IPR009072 GO:0046982
Vifa6g03862 497 MobiDBLite consensus disorder prediction 327 348 - -
Vifa6g03862 497 Pfam Membrane transport protein 270 333 IPR004776 GO:0016020|GO:0055085
Vifa6g03862 497 Gene3D Ribonuclease Inhibitor 1 133 IPR032675 -
Vifa6g03862 497 Gene3D Ribonuclease Inhibitor 134 299 IPR032675 -
Vifa6g03862 497 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 75 283 - -
Vifa6g03862 497 SMART LRR_typ_2 1 25 IPR003591 -
Vifa6g03862 497 SMART LRR_typ_2 121 145 IPR003591 -
Vifa6g03862 497 SMART LRR_typ_2 26 48 IPR003591 -
Vifa6g03862 497 ProSitePatterns NF-YB/HAP3 subunit signature. 383 399 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vifa6g03862 497 SUPERFAMILY RNI-like 2 274 - -
Vifa6g03862 497 Pfam Leucine rich repeat 27 86 IPR001611 GO:0005515
Vifa6g03862 497 FunFam Predicted protein 113 212 - -
Vifa6g03862 497 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 352 416 IPR003958 -
Vifa6g03862 497 PRINTS CCAAT-binding transcription factor subunit A signature 399 417 - -
Vifa6g03862 497 PRINTS CCAAT-binding transcription factor subunit A signature 418 436 - -
Vifa6g03862 497 PRINTS CCAAT-binding transcription factor subunit A signature 380 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03862 Vifa-Chr6 1278374220 1278375800 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03862 12 299 Receptor kinase-like Gene Family AT1G17750 30.449 3.15e-29 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa6g03862 CBFD_NFYB_HMF 4.9e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03862 - - gmx:100778035 388.652