Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03861 ATGAAACTTTACTCCTCTCTTCTCTTCTTCTCTTCCTTCTTCCATTTCTACACTCTTTCTTCTGCACTCAACTCAGATGGCTTAGCACTTTTATCATTCAAATCTCACTGGACATCACTTCCACCTCTCATAAACTCAACATGGGTTTCTTCTCATTCAACACCATGCTCATGGGCTGGTCTCAAATGCAACTCTTTCCACCGTGTAATCTCTCTCAACCTTTTTTATCTTGATATCTACGGTCCACTAGGACCAGAAATTGCAAACTGCACACACCTTCAACACATAGATCTTATTTACAACTACTTCAATGGCCAAATACCTCACTCTTTCGCTAACCTTCACAAACTCAAATATCTCAGTCTTGCTGTTAATCTTCTTAACGCTCTGTTTCCTCATTTCTTGTCTCAAATCCCTCACCTCAAGCTTCTTGATCTCTCTTATAACCAACTTCACGGTTCCATTTCAACTAGTGTTACCAACATGACTCATCTTCAAGACTTCTATCTCCAATTTAACAACTTCTCTCGTGCAATTCCTTCATCTATTGGGAATTGTACTAAGTTACAAGACTTGTATTTGAATGATAATCAGTTGAAGGTTGTTCTTCCTTACAGTCTCAACAATCTCAATCATCTTCTTAACTTTGATGTTGCCAACAATAAACTAACTGGTACTATTCCATTGAGTTTTTCTGGTTGTAGGAATTTACAGTTTTTGGATATTTCGTTCAATGATTTTGGTAGTGCCATTCCATATAGCATTGGTAATTGTACTGCTTTATCACAATTTGCCGATGTGAAATCTAATTTGGTTGGAGCTATTCCATCTTCCATTGGTCTGCTCACCAAGCTTTCGATTCTACGCCTTTCGGAGAATCATTTGTCTGGAAAGATACCTTCTGAAATAGGTAACTGCAGGTCTTTGAATGAGTTGCATTTGTATTCCAATCGACTTGATGGAAATATTCCAAAAGAATTGGGAAAACTCAGTGAATTAAGGGACCTTGAACTGTTTTCTAATCAATTGAGTGGTGAAATTCCGCTTGATATATGGAAGATTCGAAGTCTCGAGCATCTGTTTGTGTATAATAATAGCCCTTCTGGTGAACTTCCTGTGGAGATGACAGAGCTCAAGAACTTTAAGAACATTTCATTGTTTAACAACATGTTCTCTGGGGTTATACCTCAAAGCTTGGGAATTAACAGCAGTCTGGTACAGTTGGACTTTGTGAATAACAGGTTCACTGGGAACCTCCCACCAAATCTTTGTTTTGGAAGAAAGCTGAGTGTTTTGAATATGGGAATCCCTTTACTCAAAGGAATGTATGGTGAATTCTCAGGTAGTTTAATGGTACAAATCGTTGTTCTTCAATGTATAATCTGGTATACTATGATGCTTTTCATGTTTGAGTTTCGAGGAGCAAGGTTGTTGATATCTGAACAGTTTCCAGACACTGCTGGAAACCACGACCATGATAATGGCGGCGAACAAAGTCCACGTGGCTCTTCTTCCGCTGCGCGTGAGCAAGATCATCTCTTGCCTATTGCTAACATTAGCAGGATCATGAAAAAGGCTTTGCCTTCCAATGGAAAGATTGCTAAGGATGCTAAAGATACAATGCAGGAATGTGTTTCCGAATTCATCAGTTTTATTACCAGCGAGGCGAGTGAGAAATGTCAGAAAGAGAAGAGAAAGACCATTAATGGAGACGATTTGTTATGGGCTATGGCTACTTTAGGATTTGAAGACTATATAGAACCGCTTAAGCTTCCCGCCCCTTGCACTGACCTAAGTTTTCTTTCCTTACGCATAAACTTCAATGATTCAAAGGAAATTTCAGCTGCTCTTTGTCTGCTCAGAAGCTCACCTAAGCTACAAGAACTAGAAATATTGGCACGGCCCGAGGAGCAGTCTGTTGCGCATTTGTGGGAAGAGGTCTATTTGGATTGGCCAGTCATGCGAGTACAACACTGA 1977 0.3966 MKLYSSLLFFSSFFHFYTLSSALNSDGLALLSFKSHWTSLPPLINSTWVSSHSTPCSWAGLKCNSFHRVISLNLFYLDIYGPLGPEIANCTHLQHIDLIYNYFNGQIPHSFANLHKLKYLSLAVNLLNALFPHFLSQIPHLKLLDLSYNQLHGSISTSVTNMTHLQDFYLQFNNFSRAIPSSIGNCTKLQDLYLNDNQLKVVLPYSLNNLNHLLNFDVANNKLTGTIPLSFSGCRNLQFLDISFNDFGSAIPYSIGNCTALSQFADVKSNLVGAIPSSIGLLTKLSILRLSENHLSGKIPSEIGNCRSLNELHLYSNRLDGNIPKELGKLSELRDLELFSNQLSGEIPLDIWKIRSLEHLFVYNNSPSGELPVEMTELKNFKNISLFNNMFSGVIPQSLGINSSLVQLDFVNNRFTGNLPPNLCFGRKLSVLNMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTMMLFMFEFRGARLLISEQFPDTAGNHDHDNGGEQSPRGSSSAAREQDHLLPIANISRIMKKALPSNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKLPAPCTDLSFLSLRINFNDSKEISAALCLLRSSPKLQELEILARPEEQSVAHLWEEVYLDWPVMRVQH 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03861 658 MobiDBLite consensus disorder prediction 488 507 - -
Vifa6g03861 658 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Vifa6g03861 658 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 514 577 IPR003958 -
Vifa6g03861 658 FunFam Nuclear pore complex protein NUP107 23 175 - -
Vifa6g03861 658 Gene3D Ribonuclease Inhibitor 23 300 IPR032675 -
Vifa6g03861 658 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 9 314 - -
Vifa6g03861 658 Gene3D Ribonuclease Inhibitor 301 458 IPR032675 -
Vifa6g03861 658 Gene3D Histone, subunit A 500 592 IPR009072 GO:0046982
Vifa6g03861 658 PRINTS CCAAT-binding transcription factor subunit A signature 579 597 - -
Vifa6g03861 658 PRINTS CCAAT-binding transcription factor subunit A signature 541 559 - -
Vifa6g03861 658 PRINTS CCAAT-binding transcription factor subunit A signature 560 578 - -
Vifa6g03861 658 Pfam Leucine rich repeat 188 247 IPR001611 GO:0005515
Vifa6g03861 658 SUPERFAMILY L domain-like 206 420 - -
Vifa6g03861 658 SUPERFAMILY L domain-like 23 262 - -
Vifa6g03861 658 ProSitePatterns NF-YB/HAP3 subunit signature. 544 560 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vifa6g03861 658 SUPERFAMILY Histone-fold 510 591 IPR009072 GO:0046982
Vifa6g03861 658 SMART LRR_typ_2 162 186 IPR003591 -
Vifa6g03861 658 SMART LRR_typ_2 330 354 IPR003591 -
Vifa6g03861 658 SMART LRR_typ_2 114 137 IPR003591 -
Vifa6g03861 658 SMART LRR_typ_2 282 306 IPR003591 -
Vifa6g03861 658 SMART LRR_typ_2 187 209 IPR003591 -
Vifa6g03861 658 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 230 454 - -
Vifa6g03861 658 Pfam Membrane transport protein 431 494 IPR004776 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03861 Vifa-Chr6 1278354980 1278357043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03861 79 462 Receptor kinase-like Gene Family AT1G73080 27.764 1.20e-38 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa6g03861 CBFD_NFYB_HMF 9.3e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03861 - - gmx:100778035 532.717