Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03854 ATGGCGCAGTTTCCCTGCGACTCCAATGGCGTTTGCATGGTATGCAAACGCCAGCCTCTAGAAACAGAAACTCTCCACTGTATAACATGCGTAACTCCATGGCATTTTACATGTTTACCCCTCGCTCCCACCACTATCGCCGATTGGGAATGCCCCGATTGTTCTCAGCCAAATCTCGCCGCCGATTCGCTTGCTCCGTGCATCGCCGGCGATCTCGTTTCCTCCATCCGCGCCATCGAGAACGATCCGTCGCTCACCGATGAAGAGAAAGCGAAGAAACGCCAAGAACTCGTCGGCGGATCTTCTACTGAAAGTGAATCCATCAATAAAAGCTGTAATGATTCTCTTGATATCTTCGATGGAAGCCTTAATTGCTCCGTTTGCATGCAGTTACTGGAAAGACCTGTCACTACTCCGTGCGGGCACAATTTTTGTTTAAAGTGTTTTGAGAAATGTATTAGGCAAGGAAAGAACACTTGTTCGAATTGTAGGACTGCGATTCCGGCGAAGATGGCGAGTAATCCGCGGATTAATTCACAGTTAGCGATGGCGATTCGTAATGCGAAGCTAGCGAGATCGGAGGGTGGTGTTGGAGGAAGTGGCGGTTCGAAAGTTTATCATGCTGTGATTAATGATGAGCTTCCTGATACTGCTTTTACTACGGAGAGGGCGAAGAAAACAGGGAAGGCGAATGCTTGTAGTGGGAAGATATTTGTGACGATTGCGAAAGATCATTTTGGGCCGATTGTTGCTGAGAATGATCCAACGAGGAACCGTGGGGTTCTTGTTGGGGATTCGTGGGAGGATAGGATGGAATGTAGGCAATGGGGGGCTCATTTCCCTCATGTTGCTGGGATTGCGGGGCAGAGTACTCATGGTGCTCAGTCTGTTGCTCTTTCGGGTGGTTATGTTGATGATGAAGATCATGGTGAGTGGTTTCTTTATACTGGAAGTGGTGGAAGAGATCTTAGTGGTAATAAACGTACCAATAAAGATCAGTCTTTTGATCAGAAGTTTGAGAGTTATAATGAGGCTTTGAGAGTCAGTTGTCGAAAAGGTTATCCTGTTCGTGTTGTTAGGTCCCACAAGGAGAAACGTTCCTCTTATGCACCGGAAGAAGGAGTGAGATACGACGGCGTTTATAGAATTGAGAAATGCTGGCGCAAAATTGGAATACAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCACCATGGACAAGTGATTTATCCGGAGACCGTCCCCGTTCACTACCTCTAATTGAGGAGTTTAAGGGTGCAACTGATATTACTGAAAGAAAGGGTGATCCATCATGGGACTTTGATGAGAAAAAGGGCTGCTGGTTGTGGAAGAAGCCCCCACCACTAAGTAAAAAAACAAGCAAAAGGGTGTCCTCCAAAAGCAAGGATAAGCTGCTGAAAGATTTTGGTTGCAATATATGTCACAAAGTGCTGTCTTCCCCTCTTACTACTCCTTGTGCTCACAATTTCTGCAAAGCCTGCCTGGAGGATGCCTTTTCTGGCCAAAGCTATATCAGACAGAGGGCATCTCAAAGTGGACGCTCTTTGCGGACACGGAAGAACATTATGAAATGCCCTACTTGTTCAGCTGATATAGCTGATTATCTTCAGAATCCGCAGGTTAATAGAGAAATGATGGGTGTCATAGAATCACTCCAGCGACAGACTGAGCAGCAGATGGAGGAGAGTTCTGAAGAATTAAGTGCTAAAAGTGATGAAAACCTCATGCTGGATGAGGAGATGGAGGTTTCAAAGCCCTGTGATTCAGGTGAAAAAGTCTTGAAGGAGATTAATACAGATTTGGATCCTCCAAAGAAGGGGAGGAAAGTTGCCGGTGGCAAGGTTGTGGTGAACTTGGAGGAACATATTGACGATGCAGTAGTAGAAAGCGAAGCAATGGATTTTGATTAA 1950 0.46 MAQFPCDSNGVCMVCKRQPLETETLHCITCVTPWHFTCLPLAPTTIADWECPDCSQPNLAADSLAPCIAGDLVSSIRAIENDPSLTDEEKAKKRQELVGGSSTESESINKSCNDSLDIFDGSLNCSVCMQLLERPVTTPCGHNFCLKCFEKCIRQGKNTCSNCRTAIPAKMASNPRINSQLAMAIRNAKLARSEGGVGGSGGSKVYHAVINDELPDTAFTTERAKKTGKANACSGKIFVTIAKDHFGPIVAENDPTRNRGVLVGDSWEDRMECRQWGAHFPHVAGIAGQSTHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQKFESYNEALRVSCRKGYPVRVVRSHKEKRSSYAPEEGVRYDGVYRIEKCWRKIGIQGHKVCRYLFVRCDNEPAPWTSDLSGDRPRSLPLIEEFKGATDITERKGDPSWDFDEKKGCWLWKKPPPLSKKTSKRVSSKSKDKLLKDFGCNICHKVLSSPLTTPCAHNFCKACLEDAFSGQSYIRQRASQSGRSLRTRKNIMKCPTCSADIADYLQNPQVNREMMGVIESLQRQTEQQMEESSEELSAKSDENLMLDEEMEVSKPCDSGEKVLKEINTDLDPPKKGRKVAGGKVVVNLEEHIDDAVVESEAMDFD 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03854 649 ProSiteProfiles YDG domain profile. 256 404 IPR003105 -
Vifa6g03854 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 66 IPR013083 -
Vifa6g03854 649 Pfam RING-type zinc-finger 484 525 IPR027370 -
Vifa6g03854 649 SMART G9a_1 251 408 IPR003105 -
Vifa6g03854 649 Pfam SAD/SRA domain 259 407 IPR003105 -
Vifa6g03854 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 592 IPR013083 -
Vifa6g03854 649 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 227 422 - -
Vifa6g03854 649 SMART ring_2 484 541 IPR001841 -
Vifa6g03854 649 SMART ring_2 125 163 IPR001841 -
Vifa6g03854 649 Coils Coil 566 586 - -
Vifa6g03854 649 SUPERFAMILY PUA domain-like 230 423 IPR015947 -
Vifa6g03854 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 190 IPR013083 -
Vifa6g03854 649 SMART PHD_3 11 55 IPR001965 -
Vifa6g03854 649 ProSitePatterns Zinc finger RING-type signature. 499 508 IPR017907 -
Vifa6g03854 649 SUPERFAMILY FYVE/PHD zinc finger 4 56 IPR011011 -
Vifa6g03854 649 SUPERFAMILY RING/U-box 474 553 - -
Vifa6g03854 649 ProSitePatterns Zinc finger PHD-type signature. 12 54 IPR019786 -
Vifa6g03854 649 ProSiteProfiles Zinc finger RING-type profile. 484 542 IPR001841 -
Vifa6g03854 649 MobiDBLite consensus disorder prediction 84 99 - -
Vifa6g03854 649 MobiDBLite consensus disorder prediction 84 109 - -
Vifa6g03854 649 Gene3D - 227 426 IPR036987 -
Vifa6g03854 649 SUPERFAMILY RING/U-box 117 181 - -
Vifa6g03854 649 Pfam Zinc finger, C3HC4 type (RING finger) 123 168 - -
Vifa6g03854 649 ProSiteProfiles Zinc finger RING-type profile. 125 164 IPR001841 -
Vifa6g03854 649 CDD RING-HC_ORTHRUS_rpt1 122 168 IPR047498 -
Vifa6g03854 649 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 581 IPR045134 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03854 Vifa-Chr6 1275359778 1275363251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03854 3 571 C2H2 Transcription Factor Family AT5G39550 60.169 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03854 K10638 - gmx:100786796 879.782