Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03852 ATGGAGCGTTTCGACGATTCAGAAGCGCAACTCGAACGAGTTGACTCTGATCAGTTAACGTTAACAAGCTCTGGTTCAGGCATTTCGTCTATATTCAGCGCTGACGATTTCCGGAACTTGAACGGTTCCGGTGATGTTTCGTCCATCAGCAGTGGCTCTGGTGAGATTCCGGTATTTACAGTGAATCGAGTGATTCTTGCACCGTCGTTAATCGCTGAGAAGGATTCCGTTCCGGAACAGGTTTTGGTGACGGCGGTGAGAGAGAAGTGCGTCGGAAGGAGCAACAAGGGAGTGAGTTGGGGATATACTTCAGTGATTGGGAGACGGAAGGAAATGGAGGACGCTGTAGCTGTTATTCCGGGACTTTGGTCTCGCAGTTGCGATCACATCGGTGGTTGTACGGCTCCCGGCTCTAGATCCTCCGATGAGATCGGACCGATTCATTTCTTCGGCGTTTATGACGGACATGGCGGCTCTCAGGTTGCTAAATTTTGTGCTAAACGGATGCATGACATTATAGCAGAGGAATGGGACCGAGAAATAGCAGGTGCTGCTGAATGGCAGAAAAGATGGGAAGCCGTATTTGCTAATGGCTTTGAGAGGACTGACAGTGAAATCGAATCAGAAGCAGTTGCACAAGAAATGGTTGGATCTACTGCCTCTGTGGTTGTTCTATCTGGTTGTCAAATTATTACATCCAACTGTGGCGACTCAAGGGTGGTTCTTTGCCGCAGGACTCAAACTCTCCCGTTGACAGTAGATCAGAAGCCTGACAGAGAGGACGAACTCTTGAGAATTGAAGGAGAAGGAGGAAAAGTAATAAACTGGAATGGAGCCAGGGTGTTTGGTGTTCTTGCCATGTCCAGGGCCATAGGTGATCGGTACTTGAGACCATGGATTATTCCGGTGCCAGAGATAACTTTTACAGCAAGAACTGACGAGGATGAATGTTTAATTTTGGCAAGTGACGGACTTTGGGATGTAATGACGAATGATGAAGTAGGAGAAGTAGCACGCCACATTCTAAGAAGGCGCCGCAGATCCTTGTCAACAGAGGAAATATCCCCAACACAAGTTGTTGCTGATAGACTCACTGAAATTGCGATTAGTAGAAATAGTAAAGATAACATTTCAGTCATAGTTATTGATCTGAAATCAAAGAGAAAACGTCTGCAAAGGCCTCCTTCAATTTCCGAAGAACGCGATTGA 1209 0.4673 MERFDDSEAQLERVDSDQLTLTSSGSGISSIFSADDFRNLNGSGDVSSISSGSGEIPVFTVNRVILAPSLIAEKDSVPEQVLVTAVREKCVGRSNKGVSWGYTSVIGRRKEMEDAVAVIPGLWSRSCDHIGGCTAPGSRSSDEIGPIHFFGVYDGHGGSQVAKFCAKRMHDIIAEEWDREIAGAAEWQKRWEAVFANGFERTDSEIESEAVAQEMVGSTASVVVLSGCQIITSNCGDSRVVLCRRTQTLPLTVDQKPDREDELLRIEGEGGKVINWNGARVFGVLAMSRAIGDRYLRPWIIPVPEITFTARTDEDECLILASDGLWDVMTNDEVGEVARHILRRRRRSLSTEEISPTQVVADRLTEIAISRNSKDNISVIVIDLKSKRKRLQRPPSISEERD 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03852 402 Gene3D - 86 393 IPR036457 -
Vifa6g03852 402 FunFam Protein phosphatase 2C 51 92 392 - -
Vifa6g03852 402 SUPERFAMILY PP2C-like 92 385 IPR036457 -
Vifa6g03852 402 CDD PP2Cc 101 384 IPR001932 -
Vifa6g03852 402 PANTHER PROTEIN PHOSPHATASE 85 384 IPR015655 GO:0004722|GO:0006470
Vifa6g03852 402 ProSitePatterns PPM-type phosphatase domain signature. 149 157 IPR000222 GO:0043169
Vifa6g03852 402 ProSiteProfiles PPM-type phosphatase domain profile. 99 384 IPR001932 -
Vifa6g03852 402 Pfam Protein phosphatase 2C 137 377 IPR001932 -
Vifa6g03852 402 SMART PP2C_4 89 382 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03852 Vifa-Chr6 1274756362 1274760855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03852 100 394 PP2C-type Phosphatase Gene Family AT4G26080 52.077 8.30e-99 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03852 K14497 - gmx:100793293 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03852 6 1274756362 1274760855 Vifa6g03852 6 1274756362 1274760855 ECH