Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03850 ATGAGGAAGCTAAAGTATCATGAGAATAAGCTTTTGAGGAGGGTGAATTTTTTGGAATGGAAGAGAGAAGAGGGTCACAGAGAGAATATGGTTATGCAGCGCTACCATATTACTCAACGCGACGATTATAAAAAGTATGCAAGTTTAACACGGATGATTCAGAAGTTGGTGAGCACAGTGAAACAGATCGACGCCAAGGATTCCTTTCGAGTTAACATGACTGATAACCTTTTGGAAAGACTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTATGTGAAGGCTTAACTGTGTCATCCTTCTGCAGACGGAGGCTCTCAACTGTTTTGGTTAGACTAAAATTTGCGGAACATTTGAAAGAAGCTGTAACGTATATTGAGCAGGGGCATGTTCGGGTTGGACCAAATACAGTTACAGACCCAGCTTTCCTTGTAACTAGAAACCAGGAAGACTTTGTTACATGGGTGGATTCGTCTAAGATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTAATGAATTAG 549 0.408 MRKLKYHENKLLRRVNFLEWKREEGHRENMVMQRYHITQRDDYKKYASLTRMIQKLVSTVKQIDAKDSFRVNMTDNLLERLYNMGVIPTRQSITLCEGLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPNTVTDPAFLVTRNQEDFVTWVDSSKIKRKVLQYNDKLDDYDLMN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03850 182 Pfam S4 domain 107 153 IPR002942 GO:0003723
Vifa6g03850 182 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 178 IPR022801 GO:0003735|GO:0015935|GO:0019843
Vifa6g03850 182 FunFam U3 small nucleolar ribonucleoprotein IMP3 107 179 - -
Vifa6g03850 182 SMART s4_6 107 170 IPR002942 GO:0003723
Vifa6g03850 182 Pfam Ribosomal protein S4/S9 N-terminal domain 3 106 IPR001912 GO:0019843
Vifa6g03850 182 SUPERFAMILY Alpha-L RNA-binding motif 22 175 - -
Vifa6g03850 182 CDD S4 107 175 - -
Vifa6g03850 182 ProSiteProfiles S4 RNA-binding domain profile. 107 173 - -
Vifa6g03850 182 SMART Ribosomal_S4_2 3 106 IPR001912 GO:0019843
Vifa6g03850 182 Gene3D - 107 182 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03850 Vifa-Chr6 1274715691 1274717803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03850 63 148 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 32.184 7.80e-08 48.5