Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03843 ATGGGTAGAACCATAAGGTGGTTCAAGAGTTTGTTTGGGATAAAGAATGAAAGAGATAGTTCAAATTCGAATTCGAATTCGAATTCGAATTCTTCGAGTACTAAATGGAATAATCCTCCTCTTGAAACTTTCTCCAAGAGAGATTCAAATTCAAGAGGTTTGTGTCATAATCCAGCTACTATACCACCTAACATTTCACCTGCAGAAGCTGCTTGGGTTCAATCCTTCTATTCAGAATCCGAGAAAGAGCAAAACAAGCACGCCATTGCTGTAGCAGCTGCCACAGCAGCAGCTGCGGATGCTGCTGTGGCAGCTGCTCAGGCTGCCGTGGTTGTTGTTAGACTAACCAGCCACGGCAGAGACACCATATTTGGTGGTGGACACCAGAAATTTGCTGCTGTCAAGATTCAAACCACATTTAGAGGCTACTTGGCAAGAAAAGCACTAAGAGCCTTGAAAGGATTGGTAAAGTTACAAGCACTAGTTAGAGGGTACTTAGTGAGGAAGCAAGCAACAGCAACACTTTACAGTATGCAAGCTCTAATTAGAGCACAAGCAACCGTAAGATCTCATAAATCTCGTGGACTCGTCATGAACTCGAAGAATGAAACGCATAACAGATTTCAAGCACAAGCAAGAAGATCCACGGAAAAGTACAATCACATTGAGAGTAATAGGAATGAGTACATATCTTCAACTCCGATTCACAGTAGAAGATTATCATCTTCTTTTGATGCTACTACGAACAACAACAACAGCAACAATAGCAATAACAACAGTTATGATATTGGAAGTCCGAAGATAGTAGAAATCGATACAGGAAGACCAAAATCAAGGTCTAGAAGAAGCAACACATCAATTTCCGATTTTGGCGATGACCCATCATTTCAAACACTTTCATCTCCACATCCAATTATCCCATCTCAGTTATTCATTCCAAGTCAAAGGAATTTCAATGAATCAGATTGGGGAATAACAGGTGAAGAATGCAGATTTTCGACAGCGCAAAGCACTCCGCGTTTCACGAGTTCATGTAGTTGTGGATTTGTTGCACCTTCTACACCTAAAACAATTTGTGGAGATAGTTTCTACAGTGGTGAATATGGTAATTATCCTAACTACATGGCTAATACACAGTCTTTTAAGGCTAAATTGAGGTCTCATAGCGCTCCGAAGCAACGACCAGAGCCGGGTCCAAAGAAGAGGCTTACATTGAATGAACTTATGGAATCTAGAAACAGTTTGAGTGGGGTGAGAATGCAGAGGTCTTGTTCACAGATTCAGGATGCTATTAATTTTAAGAATGCTGTTATGAGTAAATTAGATAAGTCCACTGATTTCGATAGAAATTACTCCAACCGAAGGAAGTGGTGA 1374 0.4068 MGRTIRWFKSLFGIKNERDSSNSNSNSNSNSSSTKWNNPPLETFSKRDSNSRGLCHNPATIPPNISPAEAAWVQSFYSESEKEQNKHAIAVAAATAAAADAAVAAAQAAVVVVRLTSHGRDTIFGGGHQKFAAVKIQTTFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLYSMQALIRAQATVRSHKSRGLVMNSKNETHNRFQAQARRSTEKYNHIESNRNEYISSTPIHSRRLSSSFDATTNNNNSNNSNNNSYDIGSPKIVEIDTGRPKSRSRRSNTSISDFGDDPSFQTLSSPHPIIPSQLFIPSQRNFNESDWGITGEECRFSTAQSTPRFTSSCSCGFVAPSTPKTICGDSFYSGEYGNYPNYMANTQSFKAKLRSHSAPKQRPEPGPKKRLTLNELMESRNSLSGVRMQRSCSQIQDAINFKNAVMSKLDKSTDFDRNYSNRRKW 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03843 457 MobiDBLite consensus disorder prediction 18 62 - -
Vifa6g03843 457 MobiDBLite consensus disorder prediction 207 224 - -
Vifa6g03843 457 MobiDBLite consensus disorder prediction 18 57 - -
Vifa6g03843 457 SMART iq_5 151 172 IPR000048 GO:0005515
Vifa6g03843 457 SMART iq_5 128 150 IPR000048 GO:0005515
Vifa6g03843 457 MobiDBLite consensus disorder prediction 197 307 - -
Vifa6g03843 457 Pfam IQ calmodulin-binding motif 156 170 IPR000048 GO:0005515
Vifa6g03843 457 Pfam IQ calmodulin-binding motif 132 150 IPR000048 GO:0005515
Vifa6g03843 457 Gene3D - 126 175 - -
Vifa6g03843 457 ProSiteProfiles IQ motif profile. 129 157 IPR000048 GO:0005515
Vifa6g03843 457 MobiDBLite consensus disorder prediction 225 264 - -
Vifa6g03843 457 Pfam Protein of unknown function (DUF4005) 339 417 IPR025064 -
Vifa6g03843 457 ProSiteProfiles IQ motif profile. 153 180 IPR000048 GO:0005515
Vifa6g03843 457 PANTHER IQ-DOMAIN 5-RELATED 1 416 - -
Vifa6g03843 457 MobiDBLite consensus disorder prediction 280 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03843 Vifa-Chr6 1270484427 1270486062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03843 1 420 IQD Protein Family AT3G16490 46.948 3.53e-93 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03843 - - mtr:11413683 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03843 6 1270484427 1270486062 Vifa6g03843 6 1270484427 1270486062 ECH