Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03839 ATGAATTCAATTTTCTATGTTTTAACACTTGTTCTTGTCCTCCAAAATCCTATTGTAACACAATGTCACACCAAAGGTCTTCGACCAAAACCTTACAATGGAACCCAAAACTCAGCAAACATGACCAAAATTCAAGAATCAGAACAACAGTTCATGAAATGGGTGAAATTCATCGGTGCTCTCGATCACACCGTCTTTCGAACAGCGAAAAACAAGCTTTTTCCTTCTTATACTCTCAATGTCTATAAGAATTCCAAAAAAGGAGGGTTCTCAACTATTCAATCAGCCATTGATTCTCTTCCTTTCATCAACCTAGTTAGAGTTGTCATTAAGGTTCATGAAGGTGTTTACACAGAGAAAGTTTACATTCCACCATTGAAATCATTCATAACAATACAAGGAGCAGGTGCAGATAAAACAATTGTGCAATGGGGTGACACTGCTCAAACACCTAATCCTGTTGCAAAAGGACAAACACTAGGAACCTATGGTTCTGCAACTTTTGCTGTTAATTCACCTTATTTTATTGCTAAGAACATCACATTCAAAAATACTGCTCCAATTCCAGCACCAGGAGCGGTTGGAAAACAAGGTGTGGCATTGAGGATTTCGGCAGATAATGCAATGTTTCTTGGATGCAAATTTTTAGGTGCACAAGATACACTCTATGATCATCTTGGTAGACATTATTATAAAGATTGTTATATTGAAGGCTCTGTTGATTTCATATTCGGCAATGCTCTCTCACTTTTTGAGGGTTGTCACGTGCATGCTATAGCTGAGAATACCGGGGCAGTAACAGCACAAGGGAGGAGCAGTATGTTAGAGGACACGGGATTTTCATTTGTACACTGTAAGGTCACGGGATCAGGAGCACTATACCTTGGAAGGGCTTGGGGTCCTTTTTCTAGAGTTGTGTTTGCTTATACATACATGGACAATATCATCATTCCCAAAGGATGGTATAATTGGGGTGATCCCAATCGTGAAATGACTGTGTTCTATGGACAATACAAGTGCACAGGACCAGGAGCAAGCTATGCAGGGAGAGTATCTTGGTCAAGGGAACTCACTGATGAAGAAGCTAAACCTTTTATTTCACTTAGCTATATTGATGGATCTGAATGGATTAATTCTTTCTTTTGA 1146 0.3927 MNSIFYVLTLVLVLQNPIVTQCHTKGLRPKPYNGTQNSANMTKIQESEQQFMKWVKFIGALDHTVFRTAKNKLFPSYTLNVYKNSKKGGFSTIQSAIDSLPFINLVRVVIKVHEGVYTEKVYIPPLKSFITIQGAGADKTIVQWGDTAQTPNPVAKGQTLGTYGSATFAVNSPYFIAKNITFKNTAPIPAPGAVGKQGVALRISADNAMFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAENTGAVTAQGRSSMLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINSFF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03839 381 SUPERFAMILY Pectin lyase-like 75 379 IPR011050 -
Vifa6g03839 381 ProSitePatterns Pectinesterase signature 2. 236 245 IPR033131 -
Vifa6g03839 381 Gene3D - 76 380 IPR012334 -
Vifa6g03839 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 75 378 - -
Vifa6g03839 381 Pfam Pectinesterase 85 373 IPR000070 GO:0030599|GO:0042545
Vifa6g03839 381 FunFam Pectinesterase 75 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03839 Vifa-Chr6 1269126563 1269128757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03839 2 377 Carbohydrate Esterase AT5G47500 42.706 1.07e-101 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03839 K01051 - gmx:100802832 663.685