Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03833 ATGAACAAGAACACCATTCAAACCTTCCTCCACCTCCTTCTCCTCTTCCTCCTCCCAAATTCATCTAAAGCTTCCATTGGTATAGGCATTGGTGTTGGCATTGGCATTGGCAAAGGCAATGGCAATGGCAATGGCAATGTCAATGGTGGTCCTAACATTAATGGTAACACTAACACCCCAACCCCTTCAGGATCATCTAAGCAAAATCTAAACAATGCTTACAAAGCTCTTCAAGCTTGGAAATCTTCAATCACCAATGACCCTTTAAACATTCTAGACACATGGGTTGGTCCTAATGTTTGTTCTTACAAAGGAATCTTTTGTGAAACCACTACTACTACTACTACTACTCATGTTGTTGCAGGAATAGATCTCAACCATGCAAATCTTCAAGGAACACTTGTCAAAGAACTCTCACTACTATCCGATTTAACACTTCTTCATCTCAACACCAACAACTTTTCTGGCACACTTCCTGAAACATTCAAAGACTTTACCTTCCTTCAAGAGCTAGACCTCAGCAACAACCAACTCTCAGGTTCTTTTCCGACAGTTACCTTAAACATGCCAAGCTTAATCTACCTAGACCTTAGATTCAACAACTTCAAAGGCTCACTTCCTGAACAACTTTTCTACAAGAAACTCGATGCAATATTTCTCAACAACAATCAATTCAGCGGCGAAATACCTCAAAGCTTTGGTAACTCACCTGCATCAGTGATCAATTTAGCCAACAACAAATTTACCGGAAACATACCCATAAGTTTCGGTTTCATCAGTCCTAAACTCAAAGAGATTATTTTCCTTAACAATGGATTAACAGGTTGTATTCCTCAAGGTGTTGGTGTGTTTACAGAAATGCAGGTTCTTGATTTGAGTTTCAATTCACTTGTTGGTCATTTACCTGATACACTATCTTGTTTGCCAGATATAGAAATTCTTAATATAGGACATAACAAGCTTTCTGGTGATATATCAGATGTCATATGTTCTTTGACAAGCTTGTTGAATTTAACTGTTGCTTATAATTTCTTTTCTGGCTTTAGTCAAGAATGTTCAAGGCTTTTGAATATTGGTTTTGATTTTTCTGATAATTGTATACCTGGTAGGAATTTGCAAAGACCTGAACCTGAGTGTTCTTTGATTCCTGCTGGTGATTTGAATTGTCTTAGAATTCCTAGTCCAAAACCTCTTGTTTGTGCTACTTTGGCTTCAAGCTATCAAGCACAGACATCTCAAAAAAGACCCCGACACTGA 1257 0.3819 MNKNTIQTFLHLLLLFLLPNSSKASIGIGIGVGIGIGKGNGNGNGNVNGGPNINGNTNTPTPSGSSKQNLNNAYKALQAWKSSITNDPLNILDTWVGPNVCSYKGIFCETTTTTTTTHVVAGIDLNHANLQGTLVKELSLLSDLTLLHLNTNNFSGTLPETFKDFTFLQELDLSNNQLSGSFPTVTLNMPSLIYLDLRFNNFKGSLPEQLFYKKLDAIFLNNNQFSGEIPQSFGNSPASVINLANNKFTGNIPISFGFISPKLKEIIFLNNGLTGCIPQGVGVFTEMQVLDLSFNSLVGHLPDTLSCLPDIEILNIGHNKLSGDISDVICSLTSLLNLTVAYNFFSGFSQECSRLLNIGFDFSDNCIPGRNLQRPEPECSLIPAGDLNCLRIPSPKPLVCATLASSYQAQTSQKRPRH 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03833 418 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 48 411 - -
Vifa6g03833 418 SMART LRR_typ_2 332 355 IPR003591 -
Vifa6g03833 418 SMART LRR_typ_2 165 188 IPR003591 -
Vifa6g03833 418 SMART LRR_typ_2 189 213 IPR003591 -
Vifa6g03833 418 SMART LRR_typ_2 284 308 IPR003591 -
Vifa6g03833 418 SMART LRR_typ_2 141 164 IPR003591 -
Vifa6g03833 418 FunFam Leucine-rich repeat extensin-like protein 1 74 235 - -
Vifa6g03833 418 Gene3D Ribonuclease Inhibitor 264 381 IPR032675 -
Vifa6g03833 418 Gene3D Ribonuclease Inhibitor 70 263 IPR032675 -
Vifa6g03833 418 MobiDBLite consensus disorder prediction 47 68 - -
Vifa6g03833 418 Pfam Leucine rich repeat 144 202 IPR001611 GO:0005515
Vifa6g03833 418 PRINTS Leucine-rich repeat signature 168 181 - -
Vifa6g03833 418 PRINTS Leucine-rich repeat signature 284 297 - -
Vifa6g03833 418 SUPERFAMILY L domain-like 73 357 - -
Vifa6g03833 418 Pfam Leucine rich repeat N-terminal domain 71 108 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03833 Vifa-Chr6 1265459313 1265460569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03833 69 380 Leucine-rich Repeat extension Gene Families AT3G24480 51.603 3.17e-106 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03833 - - gmx:100820611 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03833 6 1265459313 1265460569 Vifa6g03833 6 1265459313 1265460569 ECH