Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03830 ATGAAGATCGAGGAATTGGATGACGCAGAGTGTTGTAGGGAAGAAGAAGAGAATTTGGAGAGACAAATCGTTAGGGTTGATGCGAAGAGAGCGTTGGTTGGAGCAGGTGCGCGGATTCTGTTTTATCCAACACTTTTGTATAACGTGCTGAGAAACAAAATGGAAGCTGAGTTCAGATGGTGGGATCAAATTGATGAGTTTTTGTTGCTGGGTGCAGTACCGTTTCCTAAAGATGTTCCTCATTTGAAGAACCTCGGTGTTGGCGGTGTAATTACTCTGAATGAACCGTATGAAACTTTGGTACCGTCTTCATTGTATCGTGCTCATGGGATTGATCATTTGGTAATTCCCACAAGAGATTATCTCTTTGCTCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATTATAATGCTACTTGTGGTAAAACTACTTATGTTCACTGTAAAGCTGGGCGTGGGAGGAGTACAACAATTGTGCTTTGTTATTTGGTTGAATACAAGCACATGACTCCTGCTGCTGCCCTTGAGTATGTGCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGGCGGTTCAAAGTTATAACAATCAAAGACCTTCTTCTTTACCACACTCTCCTTCTGGAGACACAGTTCAGGCTGTTCAATGTTATAACAATCAAAGACCTTCTCCTTTACCACACTCACCTTCTGGTGACACAGTTCTCATAACCAAAGATGATCTTGAAGGCTATCATAGCACATCTGATACAAGTATGGAGCTGGCTATCGTGCCTAAAGTGCCAAAGACTAAGCCCATGATAGCACGACTATCTTGCCTTTTTGCATCCTTAAAAGTATCAGGTAGTAGTGTTCCAATGACAAGGCGGCTACCAGTTTCAGAGTCGCGTGCTTGCTAA 918 0.4346 MKIEELDDAECCREEEENLERQIVRVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDQIDEFLLLGAVPFPKDVPHLKNLGVGGVITLNEPYETLVPSSLYRAHGIDHLVIPTRDYLFAPSFVDINRAVQFIHYNATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALEYVRSRRPRVLLAPSQWKAVQSYNNQRPSSLPHSPSGDTVQAVQCYNNQRPSPLPHSPSGDTVLITKDDLEGYHSTSDTSMELAIVPKVPKTKPMIARLSCLFASLKVSGSSVPMTRRLPVSESRAC 305
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03830 305 Coils Coil 9 29 - -
Vifa6g03830 305 Pfam Dual specificity phosphatase, catalytic domain 84 203 IPR000340 GO:0008138|GO:0016311
Vifa6g03830 305 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
Vifa6g03830 305 CDD PTPMT1 60 204 IPR044596 GO:0004721
Vifa6g03830 305 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 202 IPR029021 -
Vifa6g03830 305 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Vifa6g03830 305 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Vifa6g03830 305 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 283 - -
Vifa6g03830 305 Gene3D Protein tyrosine phosphatase superfamily 60 206 IPR029021 -
Vifa6g03830 305 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Vifa6g03830 305 FunFam Dual specificity phosphatase domain protein 60 207 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa6g03830 Vifa-Chr6 1264376490 1264378225 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03830 2 293 Protein tyrosine phosphatase (PTP) family AT2G35680 50.305 8.98e-101 297
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03830 - - gmx:100817410 497.664
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03830 6 1264376490 1264378225 Vifa6g03830 6 1264376490 1264378225 ECH