Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03829 ATGAAGATCGAGGAATTGGATGACGCAGAGTGTTGTAGGGAAGAAGAAGAGAATTTGGAGAGACAAATCGTTAGGGTTGATGCGAAGAGAGCGTTGGTTGGAGCAGGTGCGCGGATTCTGTTTTATCCAACACTTTTGTATAACGTGCTGAGAAACAAAATGGAAGCTGAGTTCAGATGGTGGGATCAAATTGATGAGTTTTTGTTGCTGGGTGCAGTACCGTTTCCTAAAGATGTTCCTCATTTGAAGAACCTCGGTGTTGGCGGTGTAATTACTCTGAATGAACCGTATGAAACTTTGGTACCGTCTTCATTGTATCGTGCTCATGGGATTGATCATTTGGTAATTCCCACAAGAGATTATCTCTTTGCTCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATTATAATGCTACTTGTGGTAAAACTACTTATGTTCACTGTAAAGCTGGGCGTGGGAGGAGTACAACAATTGTGCTTTGTTATTTGGTTGAATACAAGCACATGACTCCTGCTGCTGCCCTTGAGTATGTGCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGGCTGTTCAATGTTATAACAATCAAAGACCTTCTCCTTTACCACACTCACCTTCTGGTGACACAGTTCTCATAACCAAAGATGATCTTGAAGGCTATCATAGCACATCTGATACAAGTATGGAGCTGGCTATCGTGCCTAAAGTGCCAAAGACTAAGCCCATGATAGCACGACTATCTTGCCTTTTTGCATCCTTAAAAGTATCAGGTAGTAGTGTTCCAATGACAAGGCGGCTACCAGTTTCAGAGTCGCGTGCTTGCTAA 849 0.4358 MKIEELDDAECCREEEENLERQIVRVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDQIDEFLLLGAVPFPKDVPHLKNLGVGGVITLNEPYETLVPSSLYRAHGIDHLVIPTRDYLFAPSFVDINRAVQFIHYNATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALEYVRSRRPRVLLAPSQWKAVQCYNNQRPSPLPHSPSGDTVLITKDDLEGYHSTSDTSMELAIVPKVPKTKPMIARLSCLFASLKVSGSSVPMTRRLPVSESRAC 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03829 282 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 260 - -
Vifa6g03829 282 Coils Coil 9 29 - -
Vifa6g03829 282 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Vifa6g03829 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 202 IPR029021 -
Vifa6g03829 282 CDD PTPMT1 60 204 IPR044596 GO:0004721
Vifa6g03829 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Vifa6g03829 282 FunFam Dual specificity phosphatase domain protein 60 207 - -
Vifa6g03829 282 Pfam Dual specificity phosphatase, catalytic domain 84 203 IPR000340 GO:0008138|GO:0016311
Vifa6g03829 282 Gene3D Protein tyrosine phosphatase superfamily 60 206 IPR029021 -
Vifa6g03829 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
Vifa6g03829 282 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03829 Vifa-Chr6 1264376490 1264378225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03829 2 270 Protein tyrosine phosphatase (PTP) family AT2G35680 49.536 2.12e-100 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03829 - - gmx:100817410 509.22