Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03828 ATGATGAATAAGATGACCAGCTCTGATCTCATAGATTCTAAGCTTGAAGAACATCAGTTGTGTGGATCCAAACACTGTCCTCGCTGCGGTCACAAGTTCGATCAAGGCAAACCGGATTGGTTAGGTCTACCGGCCGGAGTGAAATTTGATCCAACAGATCAAGAACTCATCGAACATCTCGAAGCGAAGGTTGAATCGAAGAACAATATGAAATCACATCCTTTGATTGATGAATTCATTCTCACTATTGAAGGTGAAGACGGAATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGATTAAGCAGACACTTTTTCCACAGACCATCAAAGGCATATACCACAGGAACACGAAAGAGGCGAAAGATTCAAACGGAAGAATGTGATTTACAAGGAAGTTCAGGAGGAGAAACAAGATGGCACAAAACTGGAAAAACAAGACCTGTTATGGTTAACGGGAAACAAAAAGGCTGCAAGAAGATTCTAGTACTCTACACGAATTTCGGGAAGAATCGAAAACCTGAGAAGACGAACTGGGTTATGCATCAGTATCATCTAGGACAGCATGAAGAAGAGAAAGAAGGAGAGCTTGTTGTTTCAAAGATATTTTATCAGACACAGCCAAGACAGTGTAATTGGTCTGATAATAATCATAGGATTGGTGCAACAGCAACAACTACCGGTGAAGGAAGTGGTGGTGAACCTAATAATGTTATCAATGCAAGAAGAGATAGTGGAAGTGGAAGTTCTTCTTCTAAGGAGATTGTAACTCATCATAACCATACTCATATCTATAGAGACGAAATTTCTGCCGCTGCCGTTGCTGTTGCTGCTGTTGGTGTCCCAACTCCTTTAACAAGCTTCTCAAATGCTTTGGATATTCAACATCTTAAATCTGATCATTTCGGCTTCATCCCGTTTCGGAAAAACAGCTTCGATGAGGTTGGAATAGGAGAAGGTTCTACAGCATCAGGCTCATGTGATCAGGAGCAGCATCATGTAGTAACACATCATCATCATCAACATCATCAACAACAACAGCAGCAACATCAACATGAGCATCATGTGCAACAACAAATTAATGCAAACGCAGCTTTCCATATCAGTAGGCCTTCAAATCCAATCTCAACTATCATCTCTCCACCTCCACTTCACCATACATCCATCATCCTTGATGATAATTCTTATCATGTCTCAACAATCACGCTCCAAAATGATAATTTCCAGCAACAACAACAACAGCAACAACATCATAAACTTGGTGGTGGAAGGTCTGCGTCTGGTTTGGAAGAAGTCATCATGGGTTGCACTTCAACATCTTCTGATACTATCAAAGAGGAATCATCTATGAGAAACCAACAAGAAGCAGAATGGTTGAAGTACTCATCTTATTGGCCAGTTGACCCTCCTCCTCATGACAACCATCATCATCAACATCATCATCAACATCATCATGATCAATAG 1476 0.4099 MMNKMTSSDLIDSKLEEHQLCGSKHCPRCGHKFDQGKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNNMKSHPLIDEFILTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQTEECDLQGSSGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDNNHRIGATATTTGEGSGGEPNNVINARRDSGSGSSSSKEIVTHHNHTHIYRDEISAAAVAVAAVGVPTPLTSFSNALDIQHLKSDHFGFIPFRKNSFDEVGIGEGSTASGSCDQEQHHVVTHHHHQHHQQQQQQHQHEHHVQQQINANAAFHISRPSNPISTIISPPPLHHTSIILDDNSYHVSTITLQNDNFQQQQQQQQHHKLGGGRSASGLEEVIMGCTSTSSDTIKEESSMRNQQEAEWLKYSSYWPVDPPPHDNHHHQHHHQHHHDQ 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03828 491 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 6 362 IPR044799 GO:0003700
Vifa6g03828 491 Gene3D NAC domain 52 213 IPR036093 GO:0003677|GO:0006355
Vifa6g03828 491 MobiDBLite consensus disorder prediction 471 491 - -
Vifa6g03828 491 ProSiteProfiles NAC domain profile. 43 209 IPR003441 GO:0003677|GO:0006355
Vifa6g03828 491 SUPERFAMILY NAC domain 39 209 IPR036093 GO:0003677|GO:0006355
Vifa6g03828 491 Pfam No apical meristem (NAM) protein 44 190 IPR003441 GO:0003677|GO:0006355
Vifa6g03828 491 FunFam NAC domain-containing protein 73 52 213 - -
Vifa6g03828 491 MobiDBLite consensus disorder prediction 340 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03828 Vifa-Chr6 1264319855 1264322981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03828 4 469 NAC Transcription Factor Family AT5G56620 50.837 1.18e-134 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g03828 NAM 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03828 - - tpra:123915534 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03828 6 1264319855 1264322981 Vifa6g03828 6 1264319855 1264322981 ECH