Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03818 ATGAATGAGATGGTGCAAAGTAAATATTTATCTTTATCCAAATCCAAATCAAAAATTTCTTCCATCACCATGTCGATGATGATGTGGGGGGAACCGCCCCATCGTACAAATCCAACCGTCCACGTGGCACCGGCACCATGGCCGGTGATGAACAATCCAACGGCGGAGATTTTTTCTGATGATTATTCTCAGTTTTATTTCGATGAAGCGCTGAGTGCTCTTCAACAATATGTTCCGTCATCCATGGAAGAAGAAGACGATTCTGACTCGGAGATTTTTCCGAGTCATGACTCGGTGGATGCGTATACGAATGACCATTTTCGTATGTTTGAGTTCAAGATTCGGAGATGTGCACGTGGTCGGTCACATGACTGGACCGAGTGTCCTTTCGCTCATCCGGGCGAGAAAGCTCGCCGGCGTGACCCGAGGAGGGTTCTGTACTCCGGGACTTCGTGTCCGGAGTTTCGGAAAGGAAGTTGCAAGAAAGGCGATTCGTGTGAGTTTGCTCATGGGGTTTTTGAGTGCTGGCTTCATCCTTCTCGTTACCGGACTCAGCCATGCAAAGACGGAACCAGTTGCCGGCGGCGTGTTTGTTTCTTTGCTCACACGGCTGAGCAACTCAGGGCTCCGACGAATCTACAGAGTCCATTGAGTATGAACTCTGTTGAGTCGTACGACGGTTCGCCTCTCCGGCTTGCCATTGAATCCTCCTGTGTTAAAAAGCTTCGGTTCATGTCTCCTACCGGTTCTGTTTCGCCGCCGGCGGAGTCTCCTCCGTCATTGGGAAGGTCACCGGGTTCTGTGAATGAGATGGTGGCTTCGCTGCGAAATTTGCATCTTGGGAAGATGAAATCTTTACCTTCCTCATGGAATGTTCAAATGGGTTCGTGTTCGGGTTCTCCTCGATTCGGATCTCCAAGAGGACCCATGCTCCGACCCGGATTCTGTAGCTTACCAACTACGCCTACACAGCCACCGTCTCGCGGTGGCGGGGTAAACCATTTTGATCTTTGGGATCAGAGCTGTGAAGAGGAGCCTGTGATGGAGAGAGTGGAGTCTGGTAGGGATATAAGGGTCAAGATGTTTGAGAAACTGAGCAAAGAGAATTCTTTTAATGGATCCGGGTCTGGTAAGGTTGATGGGGCTCCGGATATTGGATGGGTTTCGGAGCTTGTGTGA 1179 0.5004 MNEMVQSKYLSLSKSKSKISSITMSMMMWGEPPHRTNPTVHVAPAPWPVMNNPTAEIFSDDYSQFYFDEALSALQQYVPSSMEEEDDSDSEIFPSHDSVDAYTNDHFRMFEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRRVLYSGTSCPEFRKGSCKKGDSCEFAHGVFECWLHPSRYRTQPCKDGTSCRRRVCFFAHTAEQLRAPTNLQSPLSMNSVESYDGSPLRLAIESSCVKKLRFMSPTGSVSPPAESPPSLGRSPGSVNEMVASLRNLHLGKMKSLPSSWNVQMGSCSGSPRFGSPRGPMLRPGFCSLPTTPTQPPSRGGGVNHFDLWDQSCEEEPVMERVESGRDIRVKMFEKLSKENSFNGSGSGKVDGAPDIGWVSELV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03818 392 PANTHER UNKEMPT FAMILY MEMBER 70 392 IPR045234 -
Vifa6g03818 392 MobiDBLite consensus disorder prediction 246 267 - -
Vifa6g03818 392 Gene3D - 147 210 - -
Vifa6g03818 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 152 171 IPR000571 GO:0046872
Vifa6g03818 392 SMART c3hfinal6 181 204 IPR000571 GO:0046872
Vifa6g03818 392 SMART c3hfinal6 146 172 IPR000571 GO:0046872
Vifa6g03818 392 FunFam Zinc finger CCCH domain-containing protein 66 104 172 - -
Vifa6g03818 392 ProSiteProfiles Zinc finger C3H1-type profile. 146 173 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03818 Vifa-Chr6 1260587046 1260588224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03818 102 208 C2H2 Transcription Factor Family AT5G12850 71.028 1.96e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa6g03818 zf-CCCH 7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03818 - - aprc:113867365 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03818 6 1260587046 1260588224 Vifa6g03818 6 1260587046 1260588224 ECH