Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03813 ATGGTGGAGAAGACCGGCGCCGGTAGGAAGGAAGAGGTGGTTACCAGAGAGTACACCATTAACCTCCATAAACGCCTCCATGGATGCACATTCAAGAAGAAAGCTCCTAAAGCCATCAAGGAGATAAGGAAGTTTGCCCAAAAAGCAATGGGAACCAACGATGTCCGCGTTGACGTCAAGTTGAACAAGGCTATATGGAGCCAGGGAATTAGAAGTGTCCCAAGAAGAGTCAGGGTACGAATTGCTCGCAAGAGAAATGATGATGAGGATGCTAAGGAAGAGCTCTACTCTCTTGTTACTGTTGTTGAAATCCCCAAGGAGGAGCTCAAAGGTTTGGGTACTAAGGTTATTGACGACGAAGATTGA 366 0.4672 MVEKTGAGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKLNKAIWSQGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVVEIPKEELKGLGTKVIDDED 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03813 121 ProSitePatterns Ribosomal protein L31e signature. 55 69 IPR020052 GO:0003735|GO:0005840|GO:0006412
Vifa6g03813 121 SMART Ribosomal_L31e_2 11 94 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vifa6g03813 121 FunFam 60S ribosomal protein L31 7 120 - -
Vifa6g03813 121 CDD Ribosomal_L31e 10 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vifa6g03813 121 SUPERFAMILY Ribosomal protein L31e 12 93 IPR023621 -
Vifa6g03813 121 PANTHER 60S RIBOSOMAL PROTEIN L31 3 120 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vifa6g03813 121 Gene3D - 10 121 IPR023621 -
Vifa6g03813 121 Pfam Ribosomal protein L31e 12 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03813 Vifa-Chr6 1256761595 1256762626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03813 8 121 Cytoplasmic Ribosomal Protein Gene Family AT4G26230 82.456 3.74e-67 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03813 K02910 - gmx:100499742 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03813 6 1256761595 1256762626 Vifa6g03813 6 1256761595 1256762626 ECH