Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03808 ATGGACAATATATCAAAGCCAGCAATTTCTCCCAATCCAATTATTTTGAAGAAAACAAGCGTTTATCCACGAGAAGCAGAGATTCTCAAAGAGCTAAGGAATGCAACCACAAATCATCCTCTTGGCTTCATGGGCACTTCACCTGATGCGGGGCAGCTAATGGCCTTGCTTTTGAAACTTTTAAATGCTAAAAAGACAATTGAAGTAGGAGTTTTCACTGGATACTCTCTTCTCCTCACCGCCCTTAACACTCCTTGCGATGGAAAGATTACAGCTTTAGATCCAGACAGAAAAGCATATGAGATAGGACTTCCATTCATCAAAAAGGCCGGTGTTTTGCACAAGATTGACTACATAGAGTCTCCAGCTTTGCCAATTCTTGATAAACTCCTACAAGATCCTGCAAATGAAGGGACTTTTGACTTTGCCTTTGTTGACGCTGACAAAAATAACTACTGGAATTACCATGAGAGGCTTATCGAATTGGTTAAGATTGGAGGGATTGTTGCCTATGATAACACACTTTGGGGAGGAACTGTTGCCTTACCAGATATGACAGTATCAGAACCAAAGAGAGAATGGAGAAGATTCACACTTGCTTTTAACGAAGCAATTCCAAGGGATTCTCGTCTTGAACTTGCTTTTGTTTCAATAGGCGATGGACTCACTATATGCAGACGCATTCACTGA 690 0.4101 MDNISKPAISPNPIILKKTSVYPREAEILKELRNATTNHPLGFMGTSPDAGQLMALLLKLLNAKKTIEVGVFTGYSLLLTALNTPCDGKITALDPDRKAYEIGLPFIKKAGVLHKIDYIESPALPILDKLLQDPANEGTFDFAFVDADKNNYWNYHERLIELVKIGGIVAYDNTLWGGTVALPDMTVSEPKREWRRFTLAFNEAIPRDSRLELAFVSIGDGLTICRRIH 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03808 229 PANTHER O-METHYLTRANSFERASE-RELATED 16 228 - -
Vifa6g03808 229 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 5 228 IPR002935 GO:0008171
Vifa6g03808 229 Gene3D Vaccinia Virus protein VP39 13 229 IPR029063 -
Vifa6g03808 229 CDD AdoMet_MTases 67 171 - -
Vifa6g03808 229 Pfam O-methyltransferase 18 228 IPR002935 GO:0008171
Vifa6g03808 229 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 22 227 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03808 Vifa-Chr6 1255384547 1255385678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03808 18 229 Monolignol Biosynthesis Gene Families AT4G26220 64.151 3.73e-101 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03808 K00588 - gmx:100795229 356.681