Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03793 ATGAATAGACAAAAGGGTCGTGGTTATTATGATGAAGATATGAGTTCTTGTTCTAAGGTTGTTGTTGTTGCGGTCAAAGGTTCGAAAGATATTTCAAAGACTGCTTTGGTTTGGGCTTTGACTCATGTTGTTCAACCGGGGGATTGCATTAAGCTTTTGGTCATCATTCCTGCTATTTCATCAAGGAAGAAGGTATGGGGAATTTCGAGATTTACGACTGATTGTGCTACGAGTAATTGGACGTCGCGATTAGGAACTGTATCGGATCAGAATGAAGTTATTACGAATTCATGTTCTCAATTAGTGCTTCAGCTTCATGGTTTTTATGATCCCGAGAAGATAAAGATCAGAGTGAAGATTCTTTCTGGTTCGTTCTGGGTTATATTGGACAGAAAATTGAAAGGTGAACAGAAACACTGCATGGATGAGCTGCATTGCAATATTGTAATTATGAAGCATTCTCACCCGAAGATTCTGCGTTTGAATTTGAATAGTTCGCCTAAGAAGGAACTCGGAAGAGATTGTTCACTGTCACTAGAGCCGAATGCGTATAGAAATTTAAAAGACAATTTTGAATATTCAGATATAGTTAAAGGCCCAGCAGTTACTCCTGCTAGTAGTCCTGAACAAGGGTCGCCACCATTGACTGTAACTGATATTGGAACAGCGTCGATATCGAGCTCAGATCCTGGAATGTCGCCGTTTTTTCACTCTGACAATTACGAAAGACGAAGGAGATGTTTTCCCTTTGTCGTTCACGAGGGACTCGCAAACCTCGAGGATATTGAATCTGATTCGGAGAGTGAAAAGCTAAGTTCATCGTCGAAAAGTTCGTCTTTTCAGCCATGGATTTCGAATGTAATTTGTGTAGGCGGCGAGTTTTCAAAACACGAGGACAATATTCAAAGGTGTAGTGATAGTAAGGCTTTGGTTTCTACCTATGAAGCTTTGCTTCATAAACTCACAATTTTGGATCAAGATCCTATCTTTGGAGTGCCTAGTTGTAAAATTGATGTGAACTTAAGCAAAAGTGTTCGAGAAGTGATTTCACTCGCCAGAAATGCGCCTCACGGACCTCCTCCATTGTGCTCTATTTGTCAGCACAAAGCACCTGTATTCGGGAATCCTCCAAGGTGGTTTACATTTGCGGAATTACAACTTGCCACCGGTGGTTTTTCGCAATCAAATTTTTTAGCTGAAGGTGGTTTTGGTTCGGTACACCGCGGTGTCTTACCTGATGGACAAGTTGTTGCTGTTAAGCAGTATAAATTAGCCAGTACTCAAGGAGATAAAGAATTTTGCTCAGAAGTAGAAGTCTTAAGCTGCGCACAACACCGAAATGTTGTGATGCTAATTGGGTTCTGTGTCGAGGATGGAAGAAGATTGCTGGTTTATGAGTATATCTGCAACGGATCGCTGGATTCTCATCTCTACGGACGGATGAAAAATGTGCTTGATTGGTCTGCACGCCAGAAAATCGCGGTTGGAGCAGCTCGTGGTTTGAGATATCTTCATGAGGAATGTAGAGTTGGCTGCATTGTACACCGCGATTTGCGGCCTAACAATATTCTCCTCACTCATGACTTTGAAGCATTAGTGGGAGATTTCGGACTTGCTAGGTGGCAGCCAGACGGAGATATGGGTGTGGAAACCAGGGTGATAGGAACATTCGGGTATTTGGCGCCAGAGTATGCTCAAAGTGGTCAAATTACAGAAAAAGCTGATGTGTATTCATTTGGGATAGTATTATTAGAGCTCGTGACAGGTCGGAAAGCTGTGGATATTGGCCGGCCGAGAGGCCAGCAATGCCTTAGCGAATGGGCACGGCCATTGCTTGAAGAGCAAGCAATTGATAAACTTGTAGATCCGAGCATAGGAAAGTGCTATGATGATCAAGAGGTTTATCGCATGATGCAATGTTCCTCTATGTGTATCCGACGAGATCCTCATTTAAGGCCTCGAGTGTCTCAGGTGCTCAAGATGCTGGAAGGTGACATTCTCATGTGA 2007 0.4285 MNRQKGRGYYDEDMSSCSKVVVVAVKGSKDISKTALVWALTHVVQPGDCIKLLVIIPAISSRKKVWGISRFTTDCATSNWTSRLGTVSDQNEVITNSCSQLVLQLHGFYDPEKIKIRVKILSGSFWVILDRKLKGEQKHCMDELHCNIVIMKHSHPKILRLNLNSSPKKELGRDCSLSLEPNAYRNLKDNFEYSDIVKGPAVTPASSPEQGSPPLTVTDIGTASISSSDPGMSPFFHSDNYERRRRCFPFVVHEGLANLEDIESDSESEKLSSSSKSSSFQPWISNVICVGGEFSKHEDNIQRCSDSKALVSTYEALLHKLTILDQDPIFGVPSCKIDVNLSKSVREVISLARNAPHGPPPLCSICQHKAPVFGNPPRWFTFAELQLATGGFSQSNFLAEGGFGSVHRGVLPDGQVVAVKQYKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRMKNVLDWSARQKIAVGAARGLRYLHEECRVGCIVHRDLRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAVDIGRPRGQQCLSEWARPLLEEQAIDKLVDPSIGKCYDDQEVYRMMQCSSMCIRRDPHLRPRVSQVLKMLEGDILM 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03793 668 Gene3D Phosphorylase Kinase; domain 1 364 467 - -
Vifa6g03793 668 ProSiteProfiles Protein kinase domain profile. 392 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03793 668 CDD STKc_IRAK 398 664 - -
Vifa6g03793 668 ProSitePatterns Tyrosine protein kinases specific active-site signature. 513 525 IPR008266 GO:0004672|GO:0006468
Vifa6g03793 668 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 364 467 - -
Vifa6g03793 668 MobiDBLite consensus disorder prediction 205 226 - -
Vifa6g03793 668 Pfam Protein tyrosine and serine/threonine kinase 396 662 IPR001245 GO:0004672|GO:0006468
Vifa6g03793 668 Gene3D Transferase(Phosphotransferase) domain 1 468 666 - -
Vifa6g03793 668 PANTHER OS01G0750732 PROTEIN 148 666 - -
Vifa6g03793 668 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 468 668 - -
Vifa6g03793 668 MobiDBLite consensus disorder prediction 201 226 - -
Vifa6g03793 668 SUPERFAMILY Protein kinase-like (PK-like) 372 663 IPR011009 -
Vifa6g03793 668 SMART tyrkin_6 392 662 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03793 Vifa-Chr6 1251087697 1251090873 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03793 342 658 Trihelix Transcription Factor Family AT1G68690 50.156 7.43e-103 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa6g03793 PK_Tyr_Ser-Thr 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03793 - - aprc:113855006 1102.04