Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03790 ATGGATGAGCGGCATTGCAATATTGTAATTATGAAGCATTCTCAACCGAAGATTCTACGTTTGAATTTGAATAGTTCGCCTAAGAAGGAACTTGGAAGAGATTGTTCGCTGTCACTTGATCCGAATGCGTATAGAAATTTAAAAGACAATTTTGAATATTCAGATATAATAAAGGGTCCAGCAGTTACTCCTGCTAGTAGTCCTGAACAAGGGTCGCCACTATTGACTGTAACTGATATTGGAACAGCGTCGATATCGAGCTCGGATCCGGGAATGTCTCTGTTTTTTCACTCTGACAATTATGAAAGACGAAGGAGGTGTTTTCCCTTTGTCGTTCACGAGGGACTGGAAAACCTCGAGGGTATTGAATCTGACTCGGAGAGTGAAAAGCTAAGTTCTTCGTCGAAAAGTTCGTCTTTTCAGCCATGGATTTCGAATGTAATTTGTGTAGGTGGCGAGTTCTCAAAACACATGGACAGTATTCAAAGATGTAGTGATAGTAAGGCTTTGGTTTCTACTTACGAAGCTTTGCTTCATAAACTCACAATTTTGGATCAAGATCCTATCTTTGAAGTGCCTGCTTGTAAGATCGATGTGAACTTAAGCAAGAGCGTCCGAGAAGTGATTTCACTCGCCAGAAATGCACCTCACGGACCTCCTCCGTTGTGCTCTATTTGTCAGCATAAAGCACCTGTGAGTGGGAATCCTCCAACGTGGTTTATATTTGCGGAATTACAACTTGCCACAGGTGGTTTTTCTCAAGTAAACATTTTGGCCGAAGTACTCAAGGAGAAAGAATTTTGCTCAGAAGTAGAGTTCTTAAGCTGCGCACAACACCGCAATGTTGTGATGCTAATTGGGTTCTGTGTCGAGGATGGAAGAAGATTACTAGTTTATGAATATATTTGCAACGGATCGCTGGATTCTCATCTCTACGGACGGATGAAGAATGTGCTTGATTGGCCTGCACGCCAGAAAATCGCGGTTGGAGCAGCTTGTGGTTTGAGATATCTTCATGAAGAATGTAGAGTTGGTTGCATTGTACACCGCAATTTGCGGCCTAACAATATTCTCCTCACTCATGATTTTGAAGCATTAGTGGGAGATTTCGGACTTGCTAGGTGGCAGCCAGATGGAGATATGGGTGTGGAAACAAGGGTGATAGGAACATTCGGGTATTTGGCACCAGAGTATGCTCAAAGTGGGCAAATTACAGAAAAAGCTGATGTGTATTCATTTGGGATAGTATTACTAGAGCTTGTGACAGGTTGGAAAGCTGTGGATATTGGTCGGCCGAGAGGCCAGCAATGCCTTAGTGAATGGGCGCGGCCGTTGCTTGAAGAACAAGCGACTGATAAACTTGTAGATCCGAGCATAGGAAAGTGCTATGATGATCAAGAGGTTTATCGCATGATGCAATGTTCCTCTATGTGCATCAGAAGAGATCCTCATTTAAGGCCTCGAGTGTCTCAGGTGCTCAAGATGCTGGAAGGTGACATTCTCATGTGA 1509 0.4327 MDERHCNIVIMKHSQPKILRLNLNSSPKKELGRDCSLSLDPNAYRNLKDNFEYSDIIKGPAVTPASSPEQGSPLLTVTDIGTASISSSDPGMSLFFHSDNYERRRRCFPFVVHEGLENLEGIESDSESEKLSSSSKSSSFQPWISNVICVGGEFSKHMDSIQRCSDSKALVSTYEALLHKLTILDQDPIFEVPACKIDVNLSKSVREVISLARNAPHGPPPLCSICQHKAPVSGNPPTWFIFAELQLATGGFSQVNILAEVLKEKEFCSEVEFLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRMKNVLDWPARQKIAVGAACGLRYLHEECRVGCIVHRNLRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGWKAVDIGRPRGQQCLSEWARPLLEEQATDKLVDPSIGKCYDDQEVYRMMQCSSMCIRRDPHLRPRVSQVLKMLEGDILM 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03790 502 ProSiteProfiles Protein kinase domain profile. 227 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03790 502 SUPERFAMILY Protein kinase-like (PK-like) 237 497 IPR011009 -
Vifa6g03790 502 PANTHER OS01G0750732 PROTEIN 9 500 - -
Vifa6g03790 502 Pfam Protein tyrosine and serine/threonine kinase 263 496 IPR001245 GO:0004672|GO:0006468
Vifa6g03790 502 Gene3D Transferase(Phosphotransferase) domain 1 302 500 - -
Vifa6g03790 502 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 302 502 - -
Vifa6g03790 502 Gene3D Phosphorylase Kinase; domain 1 259 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03790 Vifa-Chr6 1251051522 1251053655 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03790 235 497 Trihelix Transcription Factor Family AT5G38560 44.068 3.90e-78 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa6g03790 PK_Tyr_Ser-Thr 2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03790 - - aprc:113855006 791.956