Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03789 ATGGGAAGAAGAAAGTGTTCACATTGTGGTAAGATGGGACATAATTGTAGGACATGTACATCCTTCACCACAAAACTTGTAGGACTTCGTCTCTTTGGTGTCCAACTATCCTCATTATCATCATCATCATCATCTAATACCATCATCAAGAAAAGCTTTAGCATGGACACTTTTCCTTCACCAACCTCTTCATCTTCTTCATTCTCTTCATCAACCATTCATGATAATCATCATAACAAGAAAGGAGTTCCGTGGACAGAAGAAGAGCACAGAATATTTCTTGTTGGATTAGAAAAGCTTGGAAAAGGAGATTGGAGAGGTATCTCTAAAGACTTCGTGATTACAAGAACTCCTACACAAGTTGCAAGTCATGCTCAAAAATATTTTCTCCGATTAGCATCTCTCAATAATAAGAAAAGACGTTCAAGTCTCTTTGACTTGATTGGAAGCAAGAACACCAAGAGAGAAGTTGCATCCCCTAGTGCTAATCAGCCCTCTCTAGCTGGCCCATTTCTTCTAGGCCCAATTAGGGTCACTTAA 540 0.3926 MGRRKCSHCGKMGHNCRTCTSFTTKLVGLRLFGVQLSSLSSSSSSNTIIKKSFSMDTFPSPTSSSSSFSSSTIHDNHHNKKGVPWTEEEHRIFLVGLEKLGKGDWRGISKDFVITRTPTQVASHAQKYFLRLASLNNKKRRSSLFDLIGSKNTKREVASPSANQPSLAGPFLLGPIRVT 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03789 179 ProSiteProfiles Myb-like domain profile. 77 129 IPR001005 -
Vifa6g03789 179 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 133 IPR017930 -
Vifa6g03789 179 SMART sant 81 131 IPR001005 -
Vifa6g03789 179 Gene3D - 83 135 - -
Vifa6g03789 179 SUPERFAMILY Homeodomain-like 78 134 IPR009057 -
Vifa6g03789 179 ProSiteProfiles SANT domain profile. 85 133 IPR017884 -
Vifa6g03789 179 FunFam transcription factor MYB1R1 83 134 - -
Vifa6g03789 179 ProSiteProfiles Zinc finger CCHC-type profile. 4 21 IPR001878 GO:0003676|GO:0008270
Vifa6g03789 179 Pfam Myb-like DNA-binding domain 84 129 IPR001005 -
Vifa6g03789 179 CDD SANT 84 129 IPR001005 -
Vifa6g03789 179 PANTHER TRANSCRIPTION FACTOR KUA1 3 156 - -
Vifa6g03789 179 NCBIfam myb-like DNA-binding domain, SHAQKYF class 80 131 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03789 Vifa-Chr6 1250295182 1250296064 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa6g03789 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03789 - - cam:101500241 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03789 6 1250295182 1250296064 Vifa6g03789 6 1250295182 1250296064 ECH