Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03782 ATGGCAGGAACAATGAAAAAAGTCGACAAGATTCGTCAAATCGTGCGTCTCAAACAGCTCATGACACGGTGGAAACAACTCAGTCTCCGTCGCCATTCCCTCCGTTCAGAACCCGAGCAGCCCTGCGTTACTCCTCGACGACAACCACCGTCCGGCTTTGTCTTCGTCTACGTCGGATCGGAACGACACCGTTTCGCCATCCCCGCTCGGTTTCTCAACTTCCCCGTTTTCGCCGGTCTTCTCGATGTAACCGAGGAGGAGTTCGGTCTAAGAGGTAACGGCGGTTTGGTTCTTCCCTGCCACGTGGACTTTTTCACGGAAATCGTTAAGCGTCTCCATAGGAACGAACAGAAGTATGGAAAACTCACTTTGGAAGAGTTTGTTACAATGTTTGCTGACGTGGCGGTTGAAGGTTGTAAGGAAAAGGAAAACGTCGTCGTTTTGAGTCCTTTGTTGCAGAACGCTTTGGTTTAG 474 0.5042 MAGTMKKVDKIRQIVRLKQLMTRWKQLSLRRHSLRSEPEQPCVTPRRQPPSGFVFVYVGSERHRFAIPARFLNFPVFAGLLDVTEEEFGLRGNGGLVLPCHVDFFTEIVKRLHRNEQKYGKLTLEEFVTMFADVAVEGCKEKENVVVLSPLLQNALV 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03782 157 Pfam Auxin responsive protein 23 112 IPR003676 GO:0009733
Vifa6g03782 157 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 31 107 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03782 Vifa-Chr6 1246504358 1246504831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03782 7 110 Calmodulin-binding Proteins AT3G43120 33.083 7.08e-19 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03782 K14488 - gmx:100793118 189.889