Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03771 ATGGCTATTTCATCATCATCATCATCACTATCGCTATCTCTTCCTTTTCAATTCCGTTTTTCTCTCAAAACCCAAACTCGCCGCAACTTCCCTTGCGTTACGGCGGTGGCGGCGGCGAGCGGCGAGGTTCCTCTCCTTCAAGTCAATGATCTAAGAGCCAAAATCGTAGAATCCAATCTCGAAATTCTCAAAGGCGTTAACCTCACTGTCAACAGAGGCGAGGTTCATGCTATCATGGGGAAAAACGGTTCCGGAAAAAGCACGTTCGCTAAGGTTCTTGTAGGTCATCCGGATTATGAAGTTACCGGTGGGAGCGTTGTGTTTAAAGGAGAGAATTTGCTTGAGATGGAACCGGAGGAACGAGCGCTTGAAGGGCTTTTCATGAGTTTTCAATCTCCGGTTGCGATTCCGGGGGTTTCGAATGATCAATTTCTTGCTATGGCTTATAATGCCAGGAGGAAAAAACTCGGCCTTCCTGAACTTGGACCCCTTGAGTGTTTTTCTTATCTGATGGAAAAGCTACAACTTGTGAACATGAAGGTTGACTTTCTCAATAGGAATGTCAATGAAGGGTTTAGTGGAGGTGAACGAAAACGTAATGAAATCTTGCAGCTTGCGGTTTTGGGGGCAGATTTGGCAATTTTGGATGAAATTGATTCAGGATTGGATGTTGATGCGCTCAGGGATGTGGCAAGTGCGGTTAATAAAATTCTTACCCCAGAGAATTCTTTGTTGATGATTACTCACTATCGACGAATTCTTGATCTCTTGAAACCTTCCCATGTTCATGTTATGGACAACGGCAAAATTGCAAGGACAGGCGGCCTATCTATGGTAGATGCAATTGAGGCAGATGGATATGAACCAGTCTCGGCTTTGCTTTAA 885 0.4463 MAISSSSSSLSLSLPFQFRFSLKTQTRRNFPCVTAVAAASGEVPLLQVNDLRAKIVESNLEILKGVNLTVNRGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERALEGLFMSFQSPVAIPGVSNDQFLAMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKVDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVASAVNKILTPENSLLMITHYRRILDLLKPSHVHVMDNGKIARTGGLSMVDAIEADGYEPVSALL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03771 294 ProSitePatterns ABC transporters family signature. 192 206 IPR017871 GO:0005524|GO:0016887
Vifa6g03771 294 NCBIfam Fe-S cluster assembly ATPase SufC 46 288 IPR010230 GO:0005524
Vifa6g03771 294 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 26 291 IPR010230 GO:0005524
Vifa6g03771 294 Pfam ABC transporter 63 217 IPR003439 GO:0005524
Vifa6g03771 294 Gene3D - 45 291 IPR027417 -
Vifa6g03771 294 CDD ABC_FeS_Assembly 46 287 IPR010230 GO:0005524
Vifa6g03771 294 SMART AAA_5 72 269 IPR003593 GO:0016887
Vifa6g03771 294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 276 IPR027417 -
Vifa6g03771 294 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 292 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03771 Vifa-Chr6 1243580733 1243584057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03771 59 286 Calmodulin-binding Proteins AT2G36910 23.554 1.54e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03771 K09013 - gmx:100811883 437.958