Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa6g03771 | ATGGCTATTTCATCATCATCATCATCACTATCGCTATCTCTTCCTTTTCAATTCCGTTTTTCTCTCAAAACCCAAACTCGCCGCAACTTCCCTTGCGTTACGGCGGTGGCGGCGGCGAGCGGCGAGGTTCCTCTCCTTCAAGTCAATGATCTAAGAGCCAAAATCGTAGAATCCAATCTCGAAATTCTCAAAGGCGTTAACCTCACTGTCAACAGAGGCGAGGTTCATGCTATCATGGGGAAAAACGGTTCCGGAAAAAGCACGTTCGCTAAGGTTCTTGTAGGTCATCCGGATTATGAAGTTACCGGTGGGAGCGTTGTGTTTAAAGGAGAGAATTTGCTTGAGATGGAACCGGAGGAACGAGCGCTTGAAGGGCTTTTCATGAGTTTTCAATCTCCGGTTGCGATTCCGGGGGTTTCGAATGATCAATTTCTTGCTATGGCTTATAATGCCAGGAGGAAAAAACTCGGCCTTCCTGAACTTGGACCCCTTGAGTGTTTTTCTTATCTGATGGAAAAGCTACAACTTGTGAACATGAAGGTTGACTTTCTCAATAGGAATGTCAATGAAGGGTTTAGTGGAGGTGAACGAAAACGTAATGAAATCTTGCAGCTTGCGGTTTTGGGGGCAGATTTGGCAATTTTGGATGAAATTGATTCAGGATTGGATGTTGATGCGCTCAGGGATGTGGCAAGTGCGGTTAATAAAATTCTTACCCCAGAGAATTCTTTGTTGATGATTACTCACTATCGACGAATTCTTGATCTCTTGAAACCTTCCCATGTTCATGTTATGGACAACGGCAAAATTGCAAGGACAGGCGGCCTATCTATGGTAGATGCAATTGAGGCAGATGGATATGAACCAGTCTCGGCTTTGCTTTAA | 885 | 0.4463 | MAISSSSSSLSLSLPFQFRFSLKTQTRRNFPCVTAVAAASGEVPLLQVNDLRAKIVESNLEILKGVNLTVNRGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERALEGLFMSFQSPVAIPGVSNDQFLAMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKVDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVASAVNKILTPENSLLMITHYRRILDLLKPSHVHVMDNGKIARTGGLSMVDAIEADGYEPVSALL | 294 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa6g03771 | 294 | ProSitePatterns | ABC transporters family signature. | 192 | 206 | IPR017871 | GO:0005524|GO:0016887 | |
Vifa6g03771 | 294 | NCBIfam | Fe-S cluster assembly ATPase SufC | 46 | 288 | IPR010230 | GO:0005524 | |
Vifa6g03771 | 294 | PANTHER | ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC | 26 | 291 | IPR010230 | GO:0005524 | |
Vifa6g03771 | 294 | Pfam | ABC transporter | 63 | 217 | IPR003439 | GO:0005524 | |
Vifa6g03771 | 294 | Gene3D | - | 45 | 291 | IPR027417 | - | |
Vifa6g03771 | 294 | CDD | ABC_FeS_Assembly | 46 | 287 | IPR010230 | GO:0005524 | |
Vifa6g03771 | 294 | SMART | AAA_5 | 72 | 269 | IPR003593 | GO:0016887 | |
Vifa6g03771 | 294 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 44 | 276 | IPR027417 | - | |
Vifa6g03771 | 294 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 46 | 292 | IPR003439 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa6g03771 | Vifa-Chr6 | 1243580733 | 1243584057 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa6g03771 | 59 | 286 | Calmodulin-binding Proteins | AT2G36910 | 23.554 | 1.54e-07 | 50.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa6g03771 | K09013 | - | gmx:100811883 | 437.958 |