Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03770 ATGGTGGTTGACGGAGACGGTAAGAAGAAGCGGAAATTTAAATATCTTCAAGAACCGTTAACAACAGGTCGCATTCTGAACAACGTGTTGATGAATGATGGTCCTCTTCTTGGACGGGAATTTGATTCTCTTCCTTCAGGACCCAAAAATTACACCCATGCTTGTCAACAGGACCACGAGTCTGTCAAAAGGAGGAAGGCTTCCAATAGTGCACTTCAAAATCACCCTAATTGTAATATGAAAGCACCTGTGAAGAAACATGGCATGGGCAAAGGTCTGATGACAGTTTGGAGGGCAACCAATCATGATACTAGAGACCTTCCAGTCGGTTTTGGTTTTTCTGACCGGGAAACACCAATATCAATCATCAGGTCTCGAAAAGCTGTAATTGTGAATGGAAAGCCAAGAAATAAGTTACCTAATAGGAAACCTACATTCCAGGAGAAGAGGGAACATTTCATGCAAACAAGAGAGGGTGAATTAAACCAGTATGTGGCTCAGAACCAGCCACCTATAGAAAATTGTGAACTTGCTTTAGACAGCCCAATATCTGAGGAGGGAGTTGATCAAATTTCAATGTTAATTGATGATGAAGAGTTAGAGCGGAGAGACTTGCAAGAAGGAACCAATCTGCTTATTTGTTCAAATGAACTTGCTGCCTATGGAATGCTTGGTGGCTCACTTTGTCCAGATGTGCTAGTCAAGTTCCCTCCAGGTGCTGTCAAGATGAAGAAACCTATACATTTGCAACCTTGGGACTCATCTCCAGAACTGGTGAAGAAATTATTTAAGGTATTCCATTTCATATATACATATGCTGTAGTTGTTGATGTTTGTCCCTTCACTCTTGATGAGTTTGTTCAGGCATTTCATGATAAGGACTCAATGTTACTTGGAAAGATTCACGTGGCCCTTCTCACACGGCTTCTATCTGACATTGAAGTAGAGCTTTCTAATGGGTTTTGCTCTCAATTAAATAAGTCATGCAACTTTCTTGCGTTGCTTCACTCAGTTGAAAGTCAAGAATATTCCCTCAATGTTTGGAAAAGATCATTAAACCCTCTTACTTGGATTGAAATACTCCGCCAAGTGATGGTAGCGGCTGGATTCGGTTCCAAGCAAGGTGCCTTACGAAGAGGAGTCCTTGGCAAGGAATTGGACATACTTGTAAACTATGGTCTATGCCCTGGCACCTTGAAGTGTGAGTTGTTTAAAACCTTGTCAGAACATGGTAAAAATGGATGCAAAATTTCTGAGCTGACGAAGTCAATGCAGATTGCGGAATTAAAACTTGGCAGCACAAAGGAGGAACTAGAGTCTTTAATATATTCCACACTTTCAAGTGATATTACTTTATTTGAAAAAATTTCATCGTCTGCATATCGATTGCGTATGAGCACTGTTACTAAGGACACCGATGATTGTCAGTCAGATGCAGAGGACTCTGGGAGTGTTGACGACGAGCTTAATGAATCTGACACATGTAGCAGTGGAGATGATTTTGAAATCGATTCAATAAACCCTAATAAAAGAAAATTTAAGCGTGATAAAATTCGTAAAGTTAAACATAATCGGCTGAAAGTTTACACTGAAATTGATGAGAGCCACACAGGAGAAGTGTGGTTGTTAGGACTGATGGATAGTGAGTACTCAGATTTGAAAATTGAAGAAAAATTGAATGCATTGGCAGCGTTGACTGGTCTTCTTTCATCTGGATCCAGCATCAGGGCGAAGGATCCAGTAAATGTTAAAGCTGATTGTAGTTCAAGTATTCAATTACGTGGTTCTGGAGCAAAAATTAAGAGATCAATAGTAAAGAAGGCCAGTTCATTATTGAACCCAATTGAACAAATACAATGTATTAAAGAGGTGCTCATGAGTTCTCACCCCGGTTCAGTAGGTTCCTCATTGTTAGTCTCAAATTTCCATATTCAGGAAGCGTCCTTTGAGAAAAGAAAAGGTTCAGCTAATTCACACCCCATACAATCAGTGTTTCTGGGATCTGATCGTAGATACAATAGATACTGGCTTTTCTTGGGCCCTTGTAATGCTGGTGATCCTGGACACAGGAGGGTTTACTTTGAATCCTCTGAAGATGGTCACTGGGAGGTGATTGATACAGAAGAGGCATTGTGTGCCTTGTTGTCAGTTCTGGATGATAGAGGGAAACGTGAGGCTCTTCTTATTGAATCTTTGGAGAGACGACAAACATCTTTATGTAGATCTATGTGCAGGGTTAAGGTTAACAATATTGGAATGGGGTGTATGTCACATTCTGATCAGTCTGAGCTCGATAGGGTTACAGAAGACAGCTGTTCTCCAGTATCTGATGTAGACAATCTGAATCTGACTGAGACTGCTAGAGACTCTTTGCCGTCACCTGGTGTTGTGGTAATTGAAGCTGGGAAGAAAGCAGAGGAACAACTGCAAAAATGGATTCGTGTCCAAGAGTTTGATTCTTGGATTTGGAATTCCTTTTATTTAGATCTCAACGTTGTAAAATACGGCAAAAGGTCTTATCTCGACTCTCTCGTCAGATGTAGGAGTTGCCATGACCTTTACTGGAGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGACCTTGAAGAAAAATATGCAATCCACTTAGCAACGTGCAGGGAGAAAGAAGACTGCAGTATTTTTCCAAATCATAGAGTCTTGTCATCACAGATTCAATCATTGAAAGCTGCAATTTATGCAATTGAGTCTGTTATGCCTGAAGACGCCCTGGTTGGTGCTTGGAGGAAGTCCGCTCATAATCTATGGATCAAAAGGCTTAGACGCACCTCAACTTTAGTGGAGCTTTTGCAGGTTCTTGCTGATTTTGTTGGTGCCATCAATAAGGGCTGGTTATTCCAGTGCAAATTTCCAGACGGTGTGGTTGAAGAAACTGTTGCATCTTTTGCATCTATGCCCCATACTTCATCTGCTCTTGCACTGTGGTTGGTGAAGTTAGATGCCATAATTGAACCTTACCTAGATAGAGTTCAAACTCAGAAGAAACTGGGAATTGGTAAGCGTGGTTCTTAG 3069 0.4089 MVVDGDGKKKRKFKYLQEPLTTGRILNNVLMNDGPLLGREFDSLPSGPKNYTHACQQDHESVKRRKASNSALQNHPNCNMKAPVKKHGMGKGLMTVWRATNHDTRDLPVGFGFSDRETPISIIRSRKAVIVNGKPRNKLPNRKPTFQEKREHFMQTREGELNQYVAQNQPPIENCELALDSPISEEGVDQISMLIDDEELERRDLQEGTNLLICSNELAAYGMLGGSLCPDVLVKFPPGAVKMKKPIHLQPWDSSPELVKKLFKVFHFIYTYAVVVDVCPFTLDEFVQAFHDKDSMLLGKIHVALLTRLLSDIEVELSNGFCSQLNKSCNFLALLHSVESQEYSLNVWKRSLNPLTWIEILRQVMVAAGFGSKQGALRRGVLGKELDILVNYGLCPGTLKCELFKTLSEHGKNGCKISELTKSMQIAELKLGSTKEELESLIYSTLSSDITLFEKISSSAYRLRMSTVTKDTDDCQSDAEDSGSVDDELNESDTCSSGDDFEIDSINPNKRKFKRDKIRKVKHNRLKVYTEIDESHTGEVWLLGLMDSEYSDLKIEEKLNALAALTGLLSSGSSIRAKDPVNVKADCSSSIQLRGSGAKIKRSIVKKASSLLNPIEQIQCIKEVLMSSHPGSVGSSLLVSNFHIQEASFEKRKGSANSHPIQSVFLGSDRRYNRYWLFLGPCNAGDPGHRRVYFESSEDGHWEVIDTEEALCALLSVLDDRGKREALLIESLERRQTSLCRSMCRVKVNNIGMGCMSHSDQSELDRVTEDSCSPVSDVDNLNLTETARDSLPSPGVVVIEAGKKAEEQLQKWIRVQEFDSWIWNSFYLDLNVVKYGKRSYLDSLVRCRSCHDLYWRDERHCKICHMTFELDFDLEEKYAIHLATCREKEDCSIFPNHRVLSSQIQSLKAAIYAIESVMPEDALVGAWRKSAHNLWIKRLRRTSTLVELLQVLADFVGAINKGWLFQCKFPDGVVEETVASFASMPHTSSALALWLVKLDAIIEPYLDRVQTQKKLGIGKRGS 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03770 1022 MobiDBLite consensus disorder prediction 472 496 - -
Vifa6g03770 1022 Pfam DDT domain 257 312 IPR018501 -
Vifa6g03770 1022 MobiDBLite consensus disorder prediction 478 496 - -
Vifa6g03770 1022 PANTHER HOMEOBOX PROTEIN SIX 147 1007 - -
Vifa6g03770 1022 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 662 735 IPR028941 -
Vifa6g03770 1022 Coils Coil 417 437 - -
Vifa6g03770 1022 ProSiteProfiles DDT domain profile. 256 315 IPR018501 -
Vifa6g03770 1022 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 536 577 IPR028942 -
Vifa6g03770 1022 SMART testlast3 256 315 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03770 Vifa-Chr6 1243567064 1243575435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03770 176 576 Homeobox Transcription Factor Family AT5G44180 28.937 6.96e-45 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vifa6g03770 WSD 2.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03770 - - mtr:112417546 1597.79