Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03767 ATGACATCGCAGGAAGAAGCTGATTCATCCAGCGTACAAGTAGTTGGAGGAGGAGAGAACAACGGCATCAACACTGAGCTATGGCAAGCTTGCGCTGGACCTCTTGTCAATCTCCCTTTACCTGGAACTCATGTCGTTTACTTCCCTCAAGGTCACAGCGAACAAGTTGCAGCATCTTTGAAGAAAGATGTGGATGTCCAAGTGCCAAACTATTCCAATTTTCCATCCAAATTGCCGTGTATTCTTCACACTCTCACCTTACATGCAGATCCTGATACAGATGAAGTATATGCCCGGATGACGCTTCAGCCGGTGTCTTCGTTTGACATGGATGTCTTATTAAGATCAGATATTTCTCTCAAGTCGAGCAAGACGCAACCTGAGTTTTTCTGTAAACAACTGACAGCGAGTGATACGAGTACTCATGGTGGTTTCTCTGTACCTCGCCGTGCTGCTGAGAAGATTTTCCCCCCTCTCGATTTCTCTGCGCAACCTCCTGCTCAAGAACTTGTGGCAAAGGATTTGCATGGTAATGTCTGGAAATTCCGCCATATATATCGTGGACAACCGAAACGTCACTTGCTTACAACTGGATGGAGTTTATTTATAAGTGGAAAAAGGCTTTTAGCTGGAGACTCTGTTTTATTTATACGAGATGAAAAGCAGCAGTTGCTTTTGGGTATCAGACGAGCAAACAGGAAACCGACTAATTTATCATCCTCGGTACTATCAAGTGATAGTATGCACATTGGAATTCTGGCTGCCGCAGCTCATGCTAGTGCAAACAATAGTCCATTCACCGTGTTTTATAATCCTAGGGCGAGTCCCTCAGAATTTGTTATTCCATTGGCCAAATACTACAGGGCTGTATACAGCCATCAAATATCACCTGGCATGCGCTTTCGAATGATATTTGAAACAGAAGACTCGGCAACAAGAAGATATATGGGTACAGTTATAGGTGTCAGTGATCTGGATTCCGTGAGATGGAAAAACTCGCAGTGGCGTAATTTACAGGTTGGTTGGGATGAATCTGGTGCTGGGGAAAGGCGGAGTAGGGTCTCAATCTGGGAAATTGAACCTGTTACTGCTCCATTTTTCCTTTGTCCGCCTCCATTCTTCCGATCCAAGAGACCGAGACAACCCGGAATGCCTGATGATGAGCTATTTGATATCAGTAACCTTTTCAAGAGTACAATGCCTTGGCTTGGTGATGATATGAGTGTGAAGGATCCACAGGCTTTCCCTGGCATGAGCTTAGCTCAATGGATGACCGTACAGAAAAATCCTTCTCTGGCTAGCTCATTGCAATCGAATTGCGTACCTTCTTTGTCTGGATCCGTTCTACACAATCTTCCTGGCACCGATATTGCCCACCAGTTGGGACTTTCTACTCAACAAATCTCTCAGTCAAGCAATGTAGCTCCCAATGCTCCGGTTCATACGCCACCATCCGCATCTAGTGGATTGGGAACAGTCACGCAGTCTGAGCAACAGTTGGGTAATATTACTCAACATTCTAGACAGAACTTGGCAAATCAAACTCAACTTCTTAATCCCCAGAGCATTGTCCAAATGAACAATATTCTTCAATCACAACAACCATCCATTCAAAACCATGAACTCCATAGAAGTTTCTCTCAGAACCAACTGCAGCAGCTTCAACAAATGTGTCAGAACCAACCGCAAAATATGATTCAATCCACAATGCCTGATCACAATAATCAACATATGTCTGATAATCAGGTTCGACTTCAGTTGTTACAGAAGCTTCAACAGCAAAAACAAACATTCTTGGCTCAGCAATCTGCATTGCAGCAGCCTGCTCAACTTGTTCAAAACCAAGACCACCAGAGACGACTTTTAGATGATTCAACACAAACACACAACTCTAAGGCCCTAACTCCCGGTCAATTGTTGGATATTCCTCCTTTACTTCAAAACTCACTGCCCGAGGCTAGTTCTATGATCCATCAGATGACAGATCATAGTAGCCAGAACAATGCTCAGTTCTCTCAGCCATCCAAACAGCCAAAGCTTCAACATCAACAACAGCAAATGCAACCCGGTTCGCTGTCTAAAACGTCAAGTCATGTTGGACCTCCTTCTGCTACTACAAATAATCAGTTGTCTGCTTCTGGTTGTAGTATACGCACTGCAGCAACTGGAACTGCGCCATCTATCATTACTGATGATGTTCCATCTTGCTCCACTTCACCTTCCACAAATAACTGTGCTAGTGCGCTTCCTCCAGTGACAACATCCCATACCCTTATGAGCACAATAGGGAATGACATGGCTCAGTCTGCTGTGACAATCTTGAGTCAAAGTTCTAATGCAAATATGGTAAAATATGTACAGCCAAATTATCAAGTTAAGCCTTGTTTAAACATTTCCGAAAATCACAACCAAGGAAATATTTACCCTCAGACGTACTTGAATGGCGGTGCTGTCCAGACAGATTGTTTGGATACATCGTCTTCTACAACTTCGGTTTGCCTTTCTCAGAGCAATACTCACTTTCATCAAAATGACAACCTGTTATCTTACAATCCACAGTCGATGTTTTGTAGAGACAACATTCAAAATGTGGAAGTTCAGGCTGATGCTAGGTGCAATGTTTCATATGGCAACAGCATGAATGGGCAAATGAGAATGCCATTGAATCTAGATTCTACTATAACCAAAGGCACAACAAGGTCAAGCCAGGATTTGTCAACTAATTTCTCTTCCGAAGGCTTACTTGGAGATTATGAAAATAACGGCGATGCTCAGCCAGAACTTTCATCTTCCATGGTTTCACAAACATTTGGAGTCCCTGATATGACCTTTAATTCAATTGATTCCACCATAAATGATAGTAGTTTCTTGAATACTGGTCCATGGGCTCCACCGCCGCCGCCACATCAGTTTCAACGGATTAGAACATATACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAACAAGATATTCAGGTTACGAGGAGCTTAAACGTGATCTCGCTCGTAGATTTGGTATTGAGGGACAACTAGAAGATCGACAAAGGATAGGGTGGAAACTTGTTTACGTAGATCACGAAAATGATGTTCTGTTAGTGGGAGATGACCCTTGGGAGGAGTTTGTCAATTGCGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTTCAACGGATGAGCATAGATGGAGATTTTGGCAATGGTGGTAGCCTTCCAAAACAGGCCGGTAGCAGCTCTGATGGTGGGAATGCTTAA 3267 0.434 MTSQEEADSSSVQVVGGGENNGINTELWQACAGPLVNLPLPGTHVVYFPQGHSEQVAASLKKDVDVQVPNYSNFPSKLPCILHTLTLHADPDTDEVYARMTLQPVSSFDMDVLLRSDISLKSSKTQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDFSAQPPAQELVAKDLHGNVWKFRHIYRGQPKRHLLTTGWSLFISGKRLLAGDSVLFIRDEKQQLLLGIRRANRKPTNLSSSVLSSDSMHIGILAAAAHASANNSPFTVFYNPRASPSEFVIPLAKYYRAVYSHQISPGMRFRMIFETEDSATRRYMGTVIGVSDLDSVRWKNSQWRNLQVGWDESGAGERRSRVSIWEIEPVTAPFFLCPPPFFRSKRPRQPGMPDDELFDISNLFKSTMPWLGDDMSVKDPQAFPGMSLAQWMTVQKNPSLASSLQSNCVPSLSGSVLHNLPGTDIAHQLGLSTQQISQSSNVAPNAPVHTPPSASSGLGTVTQSEQQLGNITQHSRQNLANQTQLLNPQSIVQMNNILQSQQPSIQNHELHRSFSQNQLQQLQQMCQNQPQNMIQSTMPDHNNQHMSDNQVRLQLLQKLQQQKQTFLAQQSALQQPAQLVQNQDHQRRLLDDSTQTHNSKALTPGQLLDIPPLLQNSLPEASSMIHQMTDHSSQNNAQFSQPSKQPKLQHQQQQMQPGSLSKTSSHVGPPSATTNNQLSASGCSIRTAATGTAPSIITDDVPSCSTSPSTNNCASALPPVTTSHTLMSTIGNDMAQSAVTILSQSSNANMVKYVQPNYQVKPCLNISENHNQGNIYPQTYLNGGAVQTDCLDTSSSTTSVCLSQSNTHFHQNDNLLSYNPQSMFCRDNIQNVEVQADARCNVSYGNSMNGQMRMPLNLDSTITKGTTRSSQDLSTNFSSEGLLGDYENNGDAQPELSSSMVSQTFGVPDMTFNSIDSTINDSSFLNTGPWAPPPPPHQFQRIRTYTKVYKRGAVGRSIDITRYSGYEELKRDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQRMSIDGDFGNGGSLPKQAGSSSDGGNA 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03767 1088 MobiDBLite consensus disorder prediction 624 645 - -
Vifa6g03767 1088 FunFam Auxin response factor 294 365 - -
Vifa6g03767 1088 Gene3D - 128 231 IPR015300 -
Vifa6g03767 1088 MobiDBLite consensus disorder prediction 659 712 - -
Vifa6g03767 1088 FunFam Auxin response factor 128 232 - -
Vifa6g03767 1088 MobiDBLite consensus disorder prediction 468 494 - -
Vifa6g03767 1088 Gene3D - 294 365 - -
Vifa6g03767 1088 Pfam Auxin response factor 256 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa6g03767 1088 Coils Coil 537 557 - -
Vifa6g03767 1088 FunFam Auxin response factor 970 1064 - -
Vifa6g03767 1088 Pfam B3 DNA binding domain 130 231 IPR003340 GO:0003677
Vifa6g03767 1088 SMART B3_2 130 232 IPR003340 GO:0003677
Vifa6g03767 1088 MobiDBLite consensus disorder prediction 1066 1088 - -
Vifa6g03767 1088 ProSiteProfiles PB1 domain profile. 975 1059 IPR000270 GO:0005515
Vifa6g03767 1088 CDD B3_DNA 129 221 IPR003340 GO:0003677
Vifa6g03767 1088 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Vifa6g03767 1088 Pfam AUX/IAA family 976 1059 IPR033389 -
Vifa6g03767 1088 Gene3D - 970 1064 - -
Vifa6g03767 1088 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 1064 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa6g03767 1088 SUPERFAMILY CAD & PB1 domains 988 1053 - -
Vifa6g03767 1088 SUPERFAMILY DNA-binding pseudobarrel domain 120 259 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03767 Vifa-Chr6 1241464555 1241469315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03767 18 461 B3 DNA Binding Superfamily AT5G20730 67.181 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa6g03767 B3 9.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03767 - - gmx:100790644 1488.78