Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03760 ATGTCTAGAGTCATTCAAGAGAAGAAGCTAGGTGCAGGACGTGTTGTTGCAGTAGCCATTGAAAACAACAAAACAAGCCAATATGCTGCTAAATGGGCTGTTGATAATCTTCTTCCTAAAGATCAACATCTTTTGTTAGTTCATGTTAGACAAAGAGTTTCTTCAATTCCTACACCAAATGGAAACCTTGTACCTGTTGATGTCAATGATGATGTAGCTAGAGCTTACATGCAACAAATGGATAACGAATCGAAAGAGCTTTTCTCTTCGTTTCGTGTCTTCTGCAATAGAAAGAATATAGTGTGCAAAGAAGTCTTGTTGGAAGACTTGGATATAGCAAAGGGTATCATAGAAGGTATTACAACATATTCCATTGAGCTTCTTGTTCTTGGATCACCATCAAGGAGTGGTCTTGTAAGAAGATTTAGGACAAGTGATGTTCCTAGCATTGTGTCGAAAGGAGCGCCTCCGTTTTGCACGGTGTACATTATATCGAAAGGAAAAATCTCATCTGTGAAAACAGCTACTAGTCCTTTAACAGTGAAAGCCGTAGCGCGTAGAAATGCTATGCAGATGCCACAAAAGCTGCAGCAAAGTCCTGAGAGATTGGATGTACAACAATTAATGCGAAACACCCCGCTACGGCCAGCAGCAGAGAAGCCAGCATTACTATCACGCCTTCAAGACGAAGAAGACGAAATCAAATCGCCATTCGTGAGAGGCGCGAGACCAACTCACAGATCGTACGAGTCCACGGTCATTGACTCCGATATCTCCTTTGTGAGCAGCGGAAGGCCGAGTATCGATAGGATGTTCCCTTCAATGTATGAAGAAATGGACTCTGGAAGTGGAATGACCCCTCGGCTTTCTGGAGGCTCGGATTATGATATCAGAAGCTTCGGTTCGTCTTACTCAGGTGCTAAGTCAATTGATCATGACTATTCATTCTGTTCACAAGACAGTGGAAGGTCCGTGTCACCGCAACAAATGGTATCAAGCTCGGATGAAGTAGAAGCTGAAATGAGGAGATTGAGGTTAGAGCTGAAGCAAACAATGGAAATGTATAGTTCAGCTTGCAAGGAAGCATTGACAGCGAAACAAAGGGCAGTGGAACTTCAGCGATGGAAATCTGACGAACAAAAGAAAACCAGTGACGCTAAATTATCCCAAGAAACAGCACTCGCAGAGAGAGCGAAAAGTAAAGTTGCTATGGAAGCAGCAGAAGCGAGTAGAAAAATCGCAGAGTTGGAAGCACAGAAAAGAATCAGTGCAGAAATGAAATCTAACACAGGAGGAGACAGTTTCTTACTCGGTCCGGTTAGGTACCGAAGATATAGTATTGAGGAAATAGAAGAAGCAACAAAATACTTTTCAAACTCACTGAAAATCGGTGAAGGAGGTTATGGACCGGTCTATAGGGCTGAACTAAATCACACTGCAGTTGCAATAAAAGTGTTGAAACCCGACGCAACTCAAGGACGGTCGCAGTTTCAACAAGAGATTCAAGTTCTGAGTAACATAAGACATCCAAACATGGTTCTTCTCCTTGGAGCGTGTCCCGAGTTCGGTTGCCTAGTGTATGAGCACATGAGTAATGGAAGCTTGGATGATTGTCTCTTTAGGAGAAATAATAGTAAAGCACCAGTTCTGCCATGGCAGCTAAGATTCCGAATTGCTGCGGAGATAGCCACCGGGCTCCTTTTCCTTCATCAGACTAAACCAGAACCATTGGTGCACCGTGACTTAAAACCCGGAAATATTTTGCTCGACCGGAACTATGTGAGCAAGATTAGTGATGTAGGGTTGGCAAGGCTTGTCCCTCCTTCAGTTGCAGACACGGTGACACAGTATCGCATGACAGCAACTGCTGGAACTTTCTGTTACATTGATCCGGAGTATCAGCAAACGGGCATGCTCGGAACAAAGTCTGATATTTACTCACTCGGTATCATGCTTCTACAGATGATAACAGCAAAGCCACCAATGGGTTTGAGTCACCAAGTTGCAAAATCTATTAAGAGAGGTAATTTTGGTGAGATGCTTGATCCTGCTGTTGAAGATTGGCCAATTGAACATGCTATGCATTTTGCAAAGCTTGCTATTCAGTGTGCTGAAATGAGAAGAAAAGATAGACCTGATCTTGGGAAAGTTGTTTTGCCAGAGCTTAACAAACTCAGAGATTTTGCTGATGAAAACATGCCTATGATGATGATGTTTGGTGGTGGAGGATTCAATCAAAGAAATAATATGTATTACCGATCCTCGTTATCCTCATCAAGTCAAGACTCAATGAGTGATTCCCAGTCAATGTCTGGATATGAAAGCCGATCAAGCTCATCTTCAATGTGA 2349 0.4291 MSRVIQEKKLGAGRVVAVAIENNKTSQYAAKWAVDNLLPKDQHLLLVHVRQRVSSIPTPNGNLVPVDVNDDVARAYMQQMDNESKELFSSFRVFCNRKNIVCKEVLLEDLDIAKGIIEGITTYSIELLVLGSPSRSGLVRRFRTSDVPSIVSKGAPPFCTVYIISKGKISSVKTATSPLTVKAVARRNAMQMPQKLQQSPERLDVQQLMRNTPLRPAAEKPALLSRLQDEEDEIKSPFVRGARPTHRSYESTVIDSDISFVSSGRPSIDRMFPSMYEEMDSGSGMTPRLSGGSDYDIRSFGSSYSGAKSIDHDYSFCSQDSGRSVSPQQMVSSSDEVEAEMRRLRLELKQTMEMYSSACKEALTAKQRAVELQRWKSDEQKKTSDAKLSQETALAERAKSKVAMEAAEASRKIAELEAQKRISAEMKSNTGGDSFLLGPVRYRRYSIEEIEEATKYFSNSLKIGEGGYGPVYRAELNHTAVAIKVLKPDATQGRSQFQQEIQVLSNIRHPNMVLLLGACPEFGCLVYEHMSNGSLDDCLFRRNNSKAPVLPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADTVTQYRMTATAGTFCYIDPEYQQTGMLGTKSDIYSLGIMLLQMITAKPPMGLSHQVAKSIKRGNFGEMLDPAVEDWPIEHAMHFAKLAIQCAEMRRKDRPDLGKVVLPELNKLRDFADENMPMMMMFGGGGFNQRNNMYYRSSLSSSSQDSMSDSQSMSGYESRSSSSSM 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03760 782 CDD STK_N 15 167 - -
Vifa6g03760 782 Gene3D Phosphorylase Kinase; domain 1 439 529 - -
Vifa6g03760 782 SMART serkin_6 457 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03760 782 ProSiteProfiles Protein kinase domain profile. 457 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03760 782 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 152 - -
Vifa6g03760 782 Gene3D HUPs 14 164 IPR014729 -
Vifa6g03760 782 Pfam Universal stress protein family 14 145 IPR006016 -
Vifa6g03760 782 SUPERFAMILY Protein kinase-like (PK-like) 434 718 IPR011009 -
Vifa6g03760 782 Pfam Protein kinase domain 460 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03760 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 577 589 IPR008271 GO:0004672|GO:0006468
Vifa6g03760 782 MobiDBLite consensus disorder prediction 755 782 - -
Vifa6g03760 782 PANTHER OS02G0152300 PROTEIN 15 769 - -
Vifa6g03760 782 Coils Coil 399 426 - -
Vifa6g03760 782 Coils Coil 334 354 - -
Vifa6g03760 782 FunFam U-box domain-containing protein 51 530 732 - -
Vifa6g03760 782 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 437 529 - -
Vifa6g03760 782 Gene3D Transferase(Phosphotransferase) domain 1 530 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03760 Vifa-Chr6 1239720087 1239723397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03760 7 743 Receptor kinase-like Gene Family AT1G78940 53.150 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa6g03760 Pkinase 1.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03760 - - mtr:11428996 1223.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03760 6 1239720087 1239723397 Vifa1g06451 1 1003066908 1003069936 PCT