Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03758 ATGGCAGAACCAATCACCGCTATTCCAAACAGAACCATATTCATCACATTGGTCTTTTTGTTATGTGTTGTTTCATCATCTTATGCTGCCTCTGACTCTGACTTGCTCCTCAAGGTAAAGGACTACCTAGAAAAAGATCCAAATGTATTGACATCATGGAACACAACGACGTCTCCTTGTAACGGCGATAAATCCAACTGGTACGGCGTTCGTTGTTATCAAGGAAAAGTTTGGGGATTGAAACTTGAGAATATGAGGTTAAAAGGGTTCATTGACGTTGATTCTCTTAAGGAGTTACCATATCTTAGAACTATTAGTTTCATGCATAATGAATTTGATGGTTCTTGGCCTGAGATTAACAAACTCGTCGGTCTTAAATCGGTTTATCTTTCGAATAACAAATTCTCCGGAGATATTCCTGCTGATACTTTCGTTGGTATGCAGTGGTTGAAGAAAATTTATCTTTCAAATAATCAGTTTACAGGTCCTATTCCACCTTCTATTGTTATGTTGCCAAAGCTTATGGAATTGAGATTGGATGGAAACAAATTCACTGGTCCTCTTCCTCATCTTAGGCAACCCAGATTGAAATTATTCAATGTAGCTAACAATCAGTTGCAGGGTCCAATCCCAATCACTCTTAGTAGAATCCACGCTTCTTCTTTCGCAGGGAATGAAGAATTATGCGGGGCACCATTAGCTGCATGTCCTTCAAAGAAGCCATCGACCGCAAGTATTTTATTGGTGGTTGTGGTAGTTTGCGTAGCGTTGATTGTGATCGGAGTCACGGTGTTTTTCATCCTTCATCGGAGAAGAAACTGCGAGCCATCATCAATTCTTGAGAATCCGCCTTCAGGTCACCATAACGGCAAAATAGGACATAAAGATATTGGTAGCGACAGTGTAAGATCAACAAGGTCATCGGGTTCGAGCCATAGTAAAAAAGCCAATCAGATGACGTTGTCGTTTATAAGAGACGACAGAGAGAGGTTTGATTTGCAAGAGTTGTTGAGAGCTTCTGCTGAGATTTTGGGAAGTGGTTGTTATAGTTCTTCTTATAAGGCTTCATTGGTGAATGGACCAAAAATAGTGGTGAAGAGGTTTAAACAAATGAATAATGTAGGGAAGGAAGAGTTTCAAGAGCACATGAGAAGGATTGGAAGAATGAATAGTCCTAATTTGATCCCTCTTGTTGCTTACTATTATAGAAAAGAAGAGAAGCTTTTGGTTACTGATTTTGTTCAGAATGGAAGTCTAGCTGTTCGCCTTCACGGACATCAAGCTCTAGGAGAACCAAGCCTTGATTGGCCAACAAGGTTGAAAATAGTGAAAGGAATAGCAAGAGGTCTTGAACATCTATACAAAGACATGCCAAGCCTAATTGCACCTCATGGAAATCTCAAATCCTCAAACGTCCTTCTATCCGAAACATTCGAACCACTCCTCACAGACTATGGACTAGTCCCAGTCACAAACCAAGAAATGGCCAAAGACATAATGGTAATATACAAATCACCAGAGTATCTACAACATGGAAGAATCACAAAGAAAAGTGACGTTTGGTCTCTTGGAATACTAATACTAGAGATACTAACTGGTAAATTTCCAGCTACATTCTTACAACAAGGTAAAGGAAGTGAGGTGAGTTTAGCAAATTGGGTGTACTCAGTAGTACCTGAGGAATCGAATAGTTCAGTATTTGATATAGAAATGGGAAACACAATGAATGGTGAGGGTGAGATGGATAAGCTTTTGAGAATTGCTTTGAGTTGTTGTGAAGAAGATATTGAGAAAAGATGTGATTTGAAAGAAGTTGTTGAGAAAATTCTACAAGTGAATGAGAGAGATGTTCTTGAGGATATAATAGACATGAGTTAA 1878 0.3914 MAEPITAIPNRTIFITLVFLLCVVSSSYAASDSDLLLKVKDYLEKDPNVLTSWNTTTSPCNGDKSNWYGVRCYQGKVWGLKLENMRLKGFIDVDSLKELPYLRTISFMHNEFDGSWPEINKLVGLKSVYLSNNKFSGDIPADTFVGMQWLKKIYLSNNQFTGPIPPSIVMLPKLMELRLDGNKFTGPLPHLRQPRLKLFNVANNQLQGPIPITLSRIHASSFAGNEELCGAPLAACPSKKPSTASILLVVVVVCVALIVIGVTVFFILHRRRNCEPSSILENPPSGHHNGKIGHKDIGSDSVRSTRSSGSSHSKKANQMTLSFIRDDRERFDLQELLRASAEILGSGCYSSSYKASLVNGPKIVVKRFKQMNNVGKEEFQEHMRRIGRMNSPNLIPLVAYYYRKEEKLLVTDFVQNGSLAVRLHGHQALGEPSLDWPTRLKIVKGIARGLEHLYKDMPSLIAPHGNLKSSNVLLSETFEPLLTDYGLVPVTNQEMAKDIMVIYKSPEYLQHGRITKKSDVWSLGILILEILTGKFPATFLQQGKGSEVSLANWVYSVVPEESNSSVFDIEMGNTMNGEGEMDKLLRIALSCCEEDIEKRCDLKEVVEKILQVNERDVLEDIIDMS 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03758 625 Gene3D Ribonuclease Inhibitor 31 143 IPR032675 -
Vifa6g03758 625 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
Vifa6g03758 625 Gene3D Ribonuclease Inhibitor 144 240 IPR032675 -
Vifa6g03758 625 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 614 IPR046959 -
Vifa6g03758 625 ProSiteProfiles Protein kinase domain profile. 338 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03758 625 Gene3D Phosphorylase Kinase; domain 1 303 413 - -
Vifa6g03758 625 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Vifa6g03758 625 SUPERFAMILY L domain-like 29 233 - -
Vifa6g03758 625 Gene3D Transferase(Phosphotransferase) domain 1 414 622 - -
Vifa6g03758 625 MobiDBLite consensus disorder prediction 277 315 - -
Vifa6g03758 625 SUPERFAMILY Protein kinase-like (PK-like) 341 610 IPR011009 -
Vifa6g03758 625 FunFam Pollen receptor-like kinase 1 414 622 - -
Vifa6g03758 625 Pfam Protein tyrosine and serine/threonine kinase 342 609 IPR001245 GO:0004672|GO:0006468
Vifa6g03758 625 FunFam pollen receptor-like kinase 1 307 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03758 Vifa-Chr6 1238960985 1238963328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03758 13 620 Receptor kinase-like Gene Family AT5G35390 51.659 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa6g03758 PK_Tyr_Ser-Thr 1.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03758 - - gmx:100804368 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03758 6 1238960985 1238963328 Vifa1g06448 1 1002630325 1002632543 PCT