Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03755 ATGGGGATTTGCTTCAGCATTGAAGAAAAACACGTTTCATTCCCCGATTCAAAGCCAAAACCTAATTCCACAGGTTTCCTTGGAAATGAATCCGTTGCACGAACAACTCTATTAGGTTCGATGAATATTAAAGAACTTCGTGAAGGTGCTGGATACAGCAACGTGCTTATTTTTACCTATAATGAATTGAGGCTTGCCACTAAGCAGTTTCGGCCTGATTTTATACTTGGAGAAGGTGGATTTGGTGTTGTGTATAAAGGTGTCATTGATGATACTGTAAGAGCAGCTTATAAATCCACTGAAGTCGCTATTAAGGAACTTAATCGCGAAGGCTTTCAAGGCGATAGGGAATGGCTTGCTGAAGTTAACTATTTGGGTCAATTCAGTCACCCGAATCTTGTGAAGCTTTTTGGATTCTGCTGTGAGGATGAACACCGCTTGTTGGTCTATGAATACATGGCTAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGCCGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTGCATGCTGCAAGAGGACTTGCTTTTCTTCATGGTGCAGAAAGGCCCATCATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGGATTTCAATGCAAAACTTTCAGACTTTGGCCTTGCGAAGGATGGGCCGATGGGGGACCAAACACACGTTTCAACACGAGTGATGGGCACATATGGATACGCTGCTCCAGAGTATGTCATGACTGGTCATTTGACAGCTCGAAGTGATGTGTATGGTTTTGGGGTGGTGCTACTTGAATTACTTATCGGCAGAAGAGCACTAGATAAGAGCAGGCCCAGCCGAGAGCACAATTTGGTCGAGTGGGCACGACCGCTGTTGAATCATAACAAAAAACTTCTGAAAATTCTAGATCCGAAAATAGAAGGGCAATACTCAAGTAAAGCTGCAACAAAGGCAGCACATTTAGCATACCAATGTCTAAGCCAAAATCCGAAAGGCAGACCTCTGATGAGCCAGGTTGTTGAAATCCTTGAAAGCTTTCAGTCAAATGGGGAAAATGAGGAAAGTCAAATCCTTCAAAGTGGTGGTAGCAGTATAACCCTTTTTGAAGTTCCAAAGGGCAGCAATGATACTCCATCTTAG 1152 0.4297 MGICFSIEEKHVSFPDSKPKPNSTGFLGNESVARTTLLGSMNIKELREGAGYSNVLIFTYNELRLATKQFRPDFILGEGGFGVVYKGVIDDTVRAAYKSTEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLFGFCCEDEHRLLVYEYMASGSLEKHLFRRAGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLELLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKIEGQYSSKAATKAAHLAYQCLSQNPKGRPLMSQVVEILESFQSNGENEESQILQSGGSSITLFEVPKGSNDTPS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03755 383 FunFam Probable serine/threonine-protein kinase PBL8 153 365 - -
Vifa6g03755 383 SUPERFAMILY Protein kinase-like (PK-like) 52 348 IPR011009 -
Vifa6g03755 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vifa6g03755 383 Gene3D Phosphorylase Kinase; domain 1 45 152 - -
Vifa6g03755 383 PANTHER OS01G0588500 PROTEIN-RELATED 50 351 - -
Vifa6g03755 383 CDD STKc_IRAK 76 348 - -
Vifa6g03755 383 Gene3D Transferase(Phosphotransferase) domain 1 153 369 - -
Vifa6g03755 383 ProSitePatterns Protein kinases ATP-binding region signature. 76 105 IPR017441 GO:0005524
Vifa6g03755 383 FunFam Serine/threonine-protein kinase BIK1 39 152 - -
Vifa6g03755 383 ProSiteProfiles Protein kinase domain profile. 70 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03755 383 Pfam Protein kinase domain 75 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03755 Vifa-Chr6 1237744789 1237748542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03755 58 347 Glycoside Hydrolase AT3G07070 52.218 3.00e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa6g03755 PK_Tyr_Ser-Thr 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03755 - - gmx:100800465 665.225