Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03746 ATGAAAATAGGCTTTTTCATTTATGAAGAACCTTTGGTTCTAGAGTTTCTCCTGCTTCATTGTGACTTTATGTTTTTTGAGGATAGGGATAGTTGGAGTTGGCGTCATTCTAGTGACAGGATCTTCTCGATCTCTTCAACTTATCAGCTTCAGTTGATATTCAAAATGGTAATAGATGCACATGTAGACAAGAATATTCTTCGCTACAAACATATCCAGCTGCTCAAGATAAGTAAAGAAGTGGTAATAGATGCCACAAATAAGGGAAACATTGCACGTATTATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGAGTTTGAGTGATGAGGAGAGCGTGATTGTTCTTATTGCCAAAACTAATGTTTCTGCTGGTGAAGAACTAACGTACGGTTTCATGTATAGGAAAAAGTTTATTTCAAAATATGCAATTGAATGGAAAAACGTGATATATAAATTTTGGTGCATTTAA 480 0.35 MKIGFFIYEEPLVLEFLLLHCDFMFFEDRDSWSWRHSSDRIFSISSTYQLQLIFKMVIDAHVDKNILRYKHIQLLKISKEVVIDATNKGNIARIINHSCMPNCFARIMSLSDEESVIVLIAKTNVSAGEELTYGFMYRKKFISKYAIEWKNVIYKFWCI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03746 159 SMART set_7 50 142 IPR001214 GO:0005515
Vifa6g03746 159 ProSiteProfiles SET domain profile. 1 136 IPR001214 GO:0005515
Vifa6g03746 159 SUPERFAMILY SET domain 62 142 IPR046341 -
Vifa6g03746 159 Gene3D SET domain 27 144 IPR046341 -
Vifa6g03746 159 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 74 133 IPR044570 GO:0042800|GO:0051568
Vifa6g03746 159 Pfam SET domain 73 133 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03746 Vifa-Chr6 1233835531 1233839487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03746 78 137 EF-hand Containing Proteins AT5G13960 42.857 1.73e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa6g03746 SET 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03746 - - qsu:111989353 116.701