Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03738 ATGGGAGTGACTATAGTGGAGTCATCAATTAGCGTGTCCTCCCAGCCAAAATTGACCGCTACCTCTCGTCAACTGCCGACTTCCCTCACAGTTACAGTAACGGAATCGTCTAAATTCATGGACATTGTGAAACCTTCAACCCCTCTCGTATCATTTCTCCAACGTCTTCAACAAACCGCATTCCACACATTCAACGATCCTAAATTCGACCCCAAAACCTACGTCGATTTACCTCTTAAATTTCCTCTTTCTGTAACCGAACTCGCCTTCCAGAATCTTCCCAAATCATCCACCGCTTCTGTTTCTGTTGACGATTTGAAGCATTTTATTGGTGAGTATTTTCAAGGTGCAGGCGATGATTTGGTGTACTTTCATCCAGAGGATTTTGTTCCCGAGCCTGAGGGTTTTTTGCCCAAAGTGAAGAACCGTGAGGTCAGAGATTGGGCGGTTAAGGTTCACTCTCTTTGGAAAAACTTGAGTAGGAAGGTATCTAGTGAGGTCAACACTCACCCTAGTTATCATACTCTTCTTCCTGTTCCTGGTAATGTTGTTATTCCTGGTTCGCGGTTTCGGGAGGTTTATTATTGGGATTCTTACTGGGTCATTAGAGGGTTGTTGGCGAGTAAAATGTATAAGACTGCTAAATCTATTGTCCTCAATCTCATTTCATTCATTGATGAATATGGGTTTGTTCTCAATGGTGCTAGAGCATACTACACTAACAGGAGCCAACCTCCTCTTTTAAGCGCTATGATTTATGAGATATACAGTATCACCGGTGATGTAGAATTAGTTAAAAGATCGTTACCTGCACTACTGAAAGAGTATGAGTTTTGGAATTCAGATGTACATAAAGTGACTGTTTCGGATGCTCAAGGTTGTACTCACACGTTAAATCGCTATAACGCAAGGTGGAACAAACCTAGACCCGAATCGTCCACAACGGTGTGTTTGGACAAAGCATCTGCTTCCAAGTTTTCGACTGCTTCAGAAAAACAACATTTTTACCGTCAACTGGCATCAGCTGCAGAATCAGGATGGGATTTCAGCACAAGATGGATGAGACACCCTCCTAACTTCACAACATTGTCTACAACGTCAGTGATACCTGTTGATTTAAATGCATTTATACTTGGGATGGAACTTAATATTGCCTTCTTTGCAAACGTTACCGGAGATAATAGCACTGCCAAACACTTCCTGCAAATTTCTGATGTTAGAAAGGAGGCAATGAACTCTTTTTTCTGGAATGCAAACAAGAAACAGTGGTTTGATTGCTGGCTCAGCGATGCCAAACCTGAGAAGGTGCATGTTTGGGATACTCTTCACCAGAATCAAAATGTATTTGCTTCCAATTTTGTTCCTCTGTGGATGAAGCCATTTTACTCAGATGCTACACTTGTGACAAATGTTCTCAAAAGTCTCAAAACTTCTGGCCTTCTTCATGCCGCTGGAGTTGCAACTTCTTTGACTAATTCAGGACAGCAGTGGGACTTTCCGAATGGTTGGGCTCCACTTCAACACATGTTAGTTGAAGGCCTTGTAAAATCAGGGTTGGAAGAAGCAAGGTCATTGGCTGAAGAAATTGCCATCAGATGGATCACAACAAATTATATTGTTTACAAAAAAACTGGTGTAATGCACGAAAAGTTTGACGTTGAGAAATGCGGAGAATTTGGAGGTGGAGGTGAATACGTACCTCAGACTGGTTTTGGCTGGTCCAATGGAGTTGTGTTGGCATTCCTGGAAGAGTTTGGATGGCCTGAAGATCGTAATATAGAATGCTGA 1788 0.4217 MGVTIVESSISVSSQPKLTATSRQLPTSLTVTVTESSKFMDIVKPSTPLVSFLQRLQQTAFHTFNDPKFDPKTYVDLPLKFPLSVTELAFQNLPKSSTASVSVDDLKHFIGEYFQGAGDDLVYFHPEDFVPEPEGFLPKVKNREVRDWAVKVHSLWKNLSRKVSSEVNTHPSYHTLLPVPGNVVIPGSRFREVYYWDSYWVIRGLLASKMYKTAKSIVLNLISFIDEYGFVLNGARAYYTNRSQPPLLSAMIYEIYSITGDVELVKRSLPALLKEYEFWNSDVHKVTVSDAQGCTHTLNRYNARWNKPRPESSTTVCLDKASASKFSTASEKQHFYRQLASAAESGWDFSTRWMRHPPNFTTLSTTSVIPVDLNAFILGMELNIAFFANVTGDNSTAKHFLQISDVRKEAMNSFFWNANKKQWFDCWLSDAKPEKVHVWDTLHQNQNVFASNFVPLWMKPFYSDATLVTNVLKSLKTSGLLHAAGVATSLTNSGQQWDFPNGWAPLQHMLVEGLVKSGLEEARSLAEEIAIRWITTNYIVYKKTGVMHEKFDVEKCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRNIEC 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03738 595 ProSitePatterns Trehalase signature 2. 496 505 IPR018232 GO:0004555|GO:0005991
Vifa6g03738 595 PANTHER TREHALASE 43 593 IPR001661 GO:0004555|GO:0005991
Vifa6g03738 595 Pfam Trehalase 69 586 IPR001661 GO:0004555|GO:0005991
Vifa6g03738 595 Gene3D - 51 593 IPR012341 GO:0005975
Vifa6g03738 595 SUPERFAMILY Six-hairpin glycosidases 64 588 IPR008928 GO:0005975
Vifa6g03738 595 PRINTS Glycosyl hydrolase family 37 signature 336 353 IPR001661 GO:0004555|GO:0005991
Vifa6g03738 595 PRINTS Glycosyl hydrolase family 37 signature 298 315 IPR001661 GO:0004555|GO:0005991
Vifa6g03738 595 PRINTS Glycosyl hydrolase family 37 signature 411 427 IPR001661 GO:0004555|GO:0005991
Vifa6g03738 595 PRINTS Glycosyl hydrolase family 37 signature 569 582 IPR001661 GO:0004555|GO:0005991
Vifa6g03738 595 PRINTS Glycosyl hydrolase family 37 signature 228 246 IPR001661 GO:0004555|GO:0005991
Vifa6g03738 595 PRINTS Glycosyl hydrolase family 37 signature 368 385 IPR001661 GO:0004555|GO:0005991
Vifa6g03738 595 PRINTS Glycosyl hydrolase family 37 signature 489 505 IPR001661 GO:0004555|GO:0005991
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03738 Vifa-Chr6 1229023531 1229028263 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03738 43 595 Trehalose Biosynthesis Gene Families AT4G24040 58.169 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03738 K01194 - gmx:547539 922.924