Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03737 ATGGGAGTGACTATAGTGGAGTCATCAATTAGCGTGTCCTCCCAGCCAAAATTGACCGCTACCTCTCGTCAACTGCCGACTTCCCTCACAGTTACAGTAACGGAATCGTCTAAATTCATGGACATTGTGAAACCTTCAACCCCTCTCGTATCATTTCTCCAACGTCTTCAACAAACCGCATTCCACACATTCAACGATCCTAAATTCGACCCCAAAACCTACGTCGATTTACCTCTTAAATTTCCTCTTTCTGTAACCGAACTCGCCTTCCAGAATCTTCCCAAATCATCCACCGCTTCTGTTTCTGTTGACGATTTGAAGCATTTTATTGGTGAGTATTTTCAAGGTGCAGGCGATGATTTGGTGTACTTTCATCCAGAGGATTTTGTTCCCGAGCCTGAGGGTTTTTTGCCCAAAGTGAAGAACCGTGAGGTCAGAGATTGGGCGGTTAAGGTTCACTCTCTTTGGAAAAACTTGAGTAGGAAGGTATCTAGTGAGGTCAACACTCACCCTAGTTATCATACTCTTCTTCCTGTTCCTGGTAATGTTGTTATTCCTGGTTCGCGGTTTCGGGAGGTTTATTATTGGGATTCTTACTGGGTCATTAGAGGGTTGTTGGCGAGTAAAATGTATAAGACTGCTAAATCTATTGTCCTCAATCTCATTTCATTCATTGATGAATATGGGTTTGTTCTCAATGGTGCTAGAGCATACTACACTAACAGGAGCCAACCTCCTCTTTTAAGCGCTATGATTTATGAGATATACAGTATCACCGGTGATGTAGAATTAGTTAAAAGATCGTTACCTGCACTACTGAAAGAGTATGAGTTTTGGAATTCAGATGTACATAAAGTGACTGTTTCGGATGCTCAAGGTTGTACTCACACGTTAAATCGCTATAACGCAAGGTGGAACAAACCTAGACCCGAATCGTCCACAACGGACAAAGCATCTGCTTCCAAGTTTTCGACTGCTTCAGAAAAACAACATTTTTACCGTCAACTGGCATCAGCTGCAGAATCAGGATGGGATTTCAGCACAAGATGGATGAGACACCCTCCTAACTTCACAACATTGTCTACAACGTCAGTGATACCTGTTGATTTAAATGCATTTATACTTGGGATGGAACTTAATATTGCCTTCTTTGCAAACGTTACCGGAGATAATAGCACTGCCAAACACTTCCTGCAAATTTCTGATGTTAGAAAGGAGGCAATGAACTCTTTTTTCTGGAATGCAAACAAGAAACAGTGGTTTGATTGCTGGCTCAGCGATGCCAAACCTGAGAAGGTGCATGTTTGGGATACTCTTCACCAGAATCAAAATGTATTTGCTTCCAATTTTGTTCCTCTGTGGATGAAGCCATTTTACTCAGATGCTACACTTGTGACAAATGTTCTCAAAAGTCTCAAAACTTCTGGCCTTCTTCATGCCGCTGGAGTTGCAACTTCTTTGACTAATTCAGGACAGCAGTGGGACTTTCCGAATGGTTGGGCTCCACTTCAACACATGTTAGTTGAAGGCCTTGTAAAATCAGGGTTGGAAGAAGCAAGGTCATTGGCTGAAGAAATTGCCATCAGATGGATCACAACAAATTATATTGTTTACAAAAAAACTGGTGTAATGCACGAAAAGTTTGACGTTGAGAAATGCGGAGAATTTGGAGGTGGAGGTGAATACGTACCTCAGACTGGTTTTGGCTGGTCCAATGGAGTTGTGTTGGCATTCCTGGAAGAGTTTGGATGGCCTGAAGATCGTAATATAGAATGCTGA 1779 0.4216 MGVTIVESSISVSSQPKLTATSRQLPTSLTVTVTESSKFMDIVKPSTPLVSFLQRLQQTAFHTFNDPKFDPKTYVDLPLKFPLSVTELAFQNLPKSSTASVSVDDLKHFIGEYFQGAGDDLVYFHPEDFVPEPEGFLPKVKNREVRDWAVKVHSLWKNLSRKVSSEVNTHPSYHTLLPVPGNVVIPGSRFREVYYWDSYWVIRGLLASKMYKTAKSIVLNLISFIDEYGFVLNGARAYYTNRSQPPLLSAMIYEIYSITGDVELVKRSLPALLKEYEFWNSDVHKVTVSDAQGCTHTLNRYNARWNKPRPESSTTDKASASKFSTASEKQHFYRQLASAAESGWDFSTRWMRHPPNFTTLSTTSVIPVDLNAFILGMELNIAFFANVTGDNSTAKHFLQISDVRKEAMNSFFWNANKKQWFDCWLSDAKPEKVHVWDTLHQNQNVFASNFVPLWMKPFYSDATLVTNVLKSLKTSGLLHAAGVATSLTNSGQQWDFPNGWAPLQHMLVEGLVKSGLEEARSLAEEIAIRWITTNYIVYKKTGVMHEKFDVEKCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRNIEC 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03737 592 SUPERFAMILY Six-hairpin glycosidases 64 585 IPR008928 GO:0005975
Vifa6g03737 592 PANTHER TREHALASE 43 590 IPR001661 GO:0004555|GO:0005991
Vifa6g03737 592 PRINTS Glycosyl hydrolase family 37 signature 408 424 IPR001661 GO:0004555|GO:0005991
Vifa6g03737 592 PRINTS Glycosyl hydrolase family 37 signature 298 315 IPR001661 GO:0004555|GO:0005991
Vifa6g03737 592 PRINTS Glycosyl hydrolase family 37 signature 333 350 IPR001661 GO:0004555|GO:0005991
Vifa6g03737 592 PRINTS Glycosyl hydrolase family 37 signature 566 579 IPR001661 GO:0004555|GO:0005991
Vifa6g03737 592 PRINTS Glycosyl hydrolase family 37 signature 486 502 IPR001661 GO:0004555|GO:0005991
Vifa6g03737 592 PRINTS Glycosyl hydrolase family 37 signature 228 246 IPR001661 GO:0004555|GO:0005991
Vifa6g03737 592 PRINTS Glycosyl hydrolase family 37 signature 365 382 IPR001661 GO:0004555|GO:0005991
Vifa6g03737 592 MobiDBLite consensus disorder prediction 304 323 - -
Vifa6g03737 592 ProSitePatterns Trehalase signature 2. 493 502 IPR018232 GO:0004555|GO:0005991
Vifa6g03737 592 Pfam Trehalase 69 583 IPR001661 GO:0004555|GO:0005991
Vifa6g03737 592 Gene3D - 51 590 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03737 Vifa-Chr6 1229023531 1229028263 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03737 43 592 Trehalose Biosynthesis Gene Families AT4G24040 58.484 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03737 K01194 - gmx:547539 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03737 6 1229023531 1229028263 Vifa6g03737 6 1229023531 1229028263 ECH