Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03717 ATGGAAGATACTGAAACGAAAGAAAGAATCGAAGAAACAGTTCTGAAGATCTTACAAGAATCAAACATGGATGAAGTCACCGAATCCAAGATTCGTAAGCAAGCCTCCAACGAACTCGACCTCAACCTATCTCAGCCTCCTTTCAAAGCCTTAGTCAAGCAAATCATCGAAGCTTTTCTCAAACAGAAGCAGCAGCAACAAGAGGAAGCGGAAGAGGAAGAAGAAAAACCAAAGCCCAGACAAGAGGCGGTTTCCAGCAGAAACAACAATGTGTATGATGATTCCGGCGATCTCGTTATCTGCGAGCTTGGGAAAAAGAGAAAAGTGACAATTCAGGATTTCAAAGGGAGAACTTTTGTGTCTATAAGGGAGTTTTATAACAAGGATGGCAAGGAACTTCCTTCTTCTAAAGGAATAAGTTTGACTGGGGAGCAGTGGTCAACCTTTAAGAAAAGTGTGCCAGCCATAGAAGAAGCCATTCAGGAAATGGAGTCGCGTGTATGA 504 0.4266 MEDTETKERIEETVLKILQESNMDEVTESKIRKQASNELDLNLSQPPFKALVKQIIEAFLKQKQQQQEEAEEEEEKPKPRQEAVSSRNNNVYDDSGDLVICELGKKRKVTIQDFKGRTFVSIREFYNKDGKELPSSKGISLTGEQWSTFKKSVPAIEEAIQEMESRV 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03717 167 MobiDBLite consensus disorder prediction 64 82 - -
Vifa6g03717 167 SUPERFAMILY DEK C-terminal domain 3 60 - -
Vifa6g03717 167 FunFam RNA polymerase II transcriptional coactivator KELP 90 166 - -
Vifa6g03717 167 MobiDBLite consensus disorder prediction 63 93 - -
Vifa6g03717 167 SUPERFAMILY ssDNA-binding transcriptional regulator domain 100 162 IPR009044 GO:0003677|GO:0006355
Vifa6g03717 167 Gene3D Transcriptional Coactivator Pc4; Chain A 91 167 IPR009044 GO:0003677|GO:0006355
Vifa6g03717 167 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 4 61 IPR014876 -
Vifa6g03717 167 Pfam Transcriptional Coactivator p15 (PC4) 101 151 IPR003173 GO:0003677|GO:0006355
Vifa6g03717 167 Coils Coil 53 76 - -
Vifa6g03717 167 Pfam DEK C terminal domain 5 60 IPR014876 -
Vifa6g03717 167 PIRSF RNA_polymII_KELP 1 167 IPR017415 -
Vifa6g03717 167 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 4 166 IPR045125 GO:0003713|GO:0060261
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03717 Vifa-Chr6 1220128458 1220130423 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vifa6g03717 DEK_C 6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03717 K25815 - gmx:100305633 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03717 6 1220128458 1220130423 Vifa6g03717 6 1220128458 1220130423 ECH