Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03712 ATGGCTTCAACTCCCAAGAAGTCACCACTTCACTCTCCTTCAAAATCCAAGCTCCGATCACAATTCTCACCAGTTACAGCACCGGTTACTCCAAACTCCTTACCTGCACGTAGATCCACGCGCTTGAATTCACTCCTCACCGATTCTCCCCAAACTCCCAATCTCGTTGATGCATTCAACGAATCGAAAAACCAAGACGAAACTCCGAAAAGAGGGAGGAGAATTGGACAGTGTACTGAACCTGCTGCAAAATCTCGTCTTGATTTTGATTTCTCTCGCAAAGAGAAAGCTCTAACTCGCAAGAGTGCGAGTAAATTAGAAAATGAAAAAAATAAGAAGAGTGAATCAGATGTAATTCCATTTGTTCTACAATCGCCGGATAAACCGAAATCCGTGAAGAGGAAGAAGGAGAAGGAGGATGAGAAAACTGTTGAATTGTCGAAGAAGAGAAATGGGAAGGATAAGTCAGTTAAGGTTTTGTTTGCTCCAACATCGCCTGAACAATCGGAAACTAAGAAGAGGAAGAGGAAGAATGTGGTTGAAAAAACGGTTGTTACCAAGGGTAAAGGTGCTGCGAGTAAAGGGGGGAAAATCGCGAAGGTGCAGTATTATAAGAAAGTTGTTTATGATGGTGGTGAGTTTGAAGTTGGGAATGACGTTTATGTGAAGAGGATAGAAGATGGTTCCTCTGACGAGGAAGATCCTGAAGTAGAGGAGTGTAAGTTGTGTTTTTGCTTTGGAGAGGAGATTATGATTGAGTGCGATAGTTGTTTGGGTGGGTTTCATTTGAAATGCTTGAAGCCGCCTCTGAAGGATGTTCCTGAAGGGGATTGGATCTGTGGGATCTGTGAGGGGCGTAAGATGGGTAAAAATGTTGATTTTCCAAAGCCTCCTCCGGGTAAGAAGCTAGCTAGGACAATGCGCCAGAAGCTTCATTCAAGTGATTTGTGGGCTGCTCGTATTGAGAGTATATGGAAAGATGTGGACGGCAGCTATTGGTGTCGGGTACGGTGGTATATGATCCCAGAGGAGACTTCTGTTGGACGACAGCCGCATAACTTGAGCAGGGAGCTATATCGGACCAATGATTCTTCAAACATTGAGATGGAATCTGTCCTTAGACATTGCTATGTCATGGCCCCTAAGGAGTACGCCAAAGCTAGCAATGAGGGAGACGATGTTTTCTTGTGCGAATATGAATATGGCATCCATTGGCATAGTTTCAAACGCCTGGCTGATATTGATGATAAAAGAGAGAGTTCTGATGAGAGTGACGGGGATGAAGACTGGAAGATCAGCAAGGAATCAGACTCTGATTCAGATGAAGATGTTGATTATGAAGAGGAAAATCTTAAAATTGCACAATCTCAACTACCGTCGAGCCATCAACTAGCTGCAAATCTGCACAAGGGACGTTTCTTTGGACTTCAGAAGATAGGAACAAAAAGAATTCCAGAGCATATAAGGTCTCACAAACAGACTAATCTTGAAAGAGCAAAGGCTTCACTGTTGTTAGCTTCGCTGCCTAAATCGTTACCTTGTAGAAATAAAGAAATGGATGAGATAACTACATTCATTAGGGGTGCTATTTCTGACAATCAATGTCTGGGACGCTGTCTTTACATTCACGGTGTTCCGGGAACTGGCAAGACAATGAGTGTACTCTCAGTGATGAGGAGTTTGAGGTCAGAAGTTGATGCAGGAAACATCAAACCGTACTGTTTTGTGGAGATTAATGGTCTGAAATTGGCTACGCCTGAGAATATTTATAAGGTCATATATGAGGCATTAAGCGGACACAGGGTCGGATGGAAAGAGGCTCTTCGTTTGCTAAATGAGAGGTTTGTTGAAGGGAAGAAAATTGAAGAAGAGGCTGACCGACCATGTATTTTGCTCATTGATGAACTTGATCTTCTTGTAACCAGAAATCAGTCGGTTCTGTACAATATCCTTGACTGGCCTACCAAGCCACATTCCAAGCTAATTGTGATAGGGATAGCAAATACAATGGATCTTCCAGAGAAGCTACTTCCTCGTATATCAAGCCGAATGGGCATCCAAAGGCTTTGCTTTGCTCCATATAATTATCAGCAGCTTCAAGAAATCATTTCGAGTCGCCTTAATGGAATTGATATATTTGAAAAACAAGCTATGGAATTTGCTTCGAGAAAGTTTAGTCTCCAAATCATTTTAAGAGTTGCAGCTATCTCGGGAGATGCACGCCGTGCTTTGGAAATATGCAGACGTGCAGCTGAAATTGCAGATTATCGTATAAAGAAGCTAGCTTCAAATCCTGATAATGTTGCTGCAGGAAAGGGACTTGTTAGCATGGCAGACGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAGTTATGAAAAACTGTTCCAGACTTAGCAAAATTTTCCTGACAGCTATGGTGCACGAGCTTTACAAAACTGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAAATACGGTTTCATGTCTCTGTACCAGCAATGGAGAAGTGTTTCCTGGATATGATATCCTCCTGCAAGTTGGCTGTAAGCTGGGCGAGTGCAGGGTCGTTTTGTGTGAAGCAGGTGCCAGGCACAGGTTGCAAAAGTTGCAGCTCAATTTCCCGAGTGACGATGTAGCCTTCTCGCTGAGAGACTGCAAAGATATACCTTGGTTGTCCAAATATCTAATGTAG 2706 0.4298 MASTPKKSPLHSPSKSKLRSQFSPVTAPVTPNSLPARRSTRLNSLLTDSPQTPNLVDAFNESKNQDETPKRGRRIGQCTEPAAKSRLDFDFSRKEKALTRKSASKLENEKNKKSESDVIPFVLQSPDKPKSVKRKKEKEDEKTVELSKKRNGKDKSVKVLFAPTSPEQSETKKRKRKNVVEKTVVTKGKGAASKGGKIAKVQYYKKVVYDGGEFEVGNDVYVKRIEDGSSDEEDPEVEECKLCFCFGEEIMIECDSCLGGFHLKCLKPPLKDVPEGDWICGICEGRKMGKNVDFPKPPPGKKLARTMRQKLHSSDLWAARIESIWKDVDGSYWCRVRWYMIPEETSVGRQPHNLSRELYRTNDSSNIEMESVLRHCYVMAPKEYAKASNEGDDVFLCEYEYGIHWHSFKRLADIDDKRESSDESDGDEDWKISKESDSDSDEDVDYEEENLKIAQSQLPSSHQLAANLHKGRFFGLQKIGTKRIPEHIRSHKQTNLERAKASLLLASLPKSLPCRNKEMDEITTFIRGAISDNQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGNIKPYCFVEINGLKLATPENIYKVIYEALSGHRVGWKEALRLLNERFVEGKKIEEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFAPYNYQQLQEIISSRLNGIDIFEKQAMEFASRKFSLQIILRVAAISGDARRALEICRRAAEIADYRIKKLASNPDNVAAGKGLVSMADVEAAIQEMFQAPHIQVMKNCSRLSKIFLTAMVHELYKTGMGETTFEKLANTVSCLCTSNGEVFPGYDILLQVGCKLGECRVVLCEAGARHRLQKLQLNFPSDDVAFSLRDCKDIPWLSKYLM 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03712 901 SMART AAA_5 536 690 IPR003593 GO:0016887
Vifa6g03712 901 ProSitePatterns Zinc finger PHD-type signature. 240 283 IPR019786 -
Vifa6g03712 901 ProSiteProfiles BAH domain profile. 284 412 IPR001025 GO:0003682
Vifa6g03712 901 MobiDBLite consensus disorder prediction 418 438 - -
Vifa6g03712 901 FunFam Origin recognition complex subunit 1 303 495 - -
Vifa6g03712 901 Pfam AAA lid domain 732 755 IPR041083 -
Vifa6g03712 901 ProSiteProfiles Zinc finger PHD-type profile. 237 286 IPR019787 -
Vifa6g03712 901 MobiDBLite consensus disorder prediction 1 62 - -
Vifa6g03712 901 FunFam Origin recognition complex subunit 1 689 789 - -
Vifa6g03712 901 SUPERFAMILY FYVE/PHD zinc finger 225 289 IPR011011 -
Vifa6g03712 901 Gene3D - 497 689 IPR027417 -
Vifa6g03712 901 SMART PHD_3 242 284 IPR001965 -
Vifa6g03712 901 MobiDBLite consensus disorder prediction 1 155 - -
Vifa6g03712 901 Gene3D - 306 496 IPR043151 -
Vifa6g03712 901 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 294 IPR013083 -
Vifa6g03712 901 Gene3D - 690 785 - -
Vifa6g03712 901 MobiDBLite consensus disorder prediction 418 447 - -
Vifa6g03712 901 Pfam BAH domain 319 409 IPR001025 GO:0003682
Vifa6g03712 901 MobiDBLite consensus disorder prediction 128 155 - -
Vifa6g03712 901 FunFam Origin recognition complex subunit 1 493 692 - -
Vifa6g03712 901 FunFam Origin recognition complex subunit 1 235 302 - -
Vifa6g03712 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 758 IPR027417 -
Vifa6g03712 901 SMART BAH_4 271 412 IPR001025 GO:0003682
Vifa6g03712 901 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 344 895 - -
Vifa6g03712 901 Pfam ATPase family associated with various cellular activities (AAA) 541 686 IPR003959 GO:0005524|GO:0016887
Vifa6g03712 901 MobiDBLite consensus disorder prediction 86 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03712 Vifa-Chr6 1218120825 1218130826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03712 203 900 Core DNA Replication Machinery Family AT4G14700 68.927 0.0 996
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03712 K02603 - gmx:100798547 1218.76