Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03709 ATGTCTCAAGTTATTATTAACAATTTATTTGAGGAACATATTCCCACACATATGGGGTTCATTCCATTCCCAAACCTAGGTTTCCCTTCTTTGGGTTGCAATAACCAATCTTTGAAAGCTTTCACTTCCATAGCTTCTTCACTTACATCTGAAATATCATCAGATTCTACATCACAAACCCTACTCACAACAACCAATCCCCAAAAATCAAAAGAATACCTCACTCCTAGCATTGTAGCTGGTACTACTCAATTCCTATCCTTGCATAGATCCCCTCTAAATCCATGGGCAATATTAGGAGGAGTAAGTGATCATTACTTCAATAATAATAATGATAAGAGAAGTGGAGTAGCTCATGATAATTATCATTTGGGGGTTTGTTCTAGCATGAAGATGAAGAAAATGAAGGGAAGAAAGAAAGTGAGAGAGCCTAGGTTTTGCTTCAAGACATTGAGTGCTGATGTTGATGTGTTGGATGATGGTTACAAGTGGAGGAAGTATGGACAAAAAGTTGTAAAGAACACACAACACCCAAGAAGCTATTACCGTTGCACACAAGAGAATTGTCGTGTAAAGAAACGTGTGGAGCGTTTAGGAGAAGATCCAAGGATGGTAATAACCACATATGAAGGGAGACATGTACACACTCCATCAAATGATCTTGAAGAATCTCAAAACCAATCTCAATTTGAGAATTTCTTATGGTAG 708 0.3771 MSQVIINNLFEEHIPTHMGFIPFPNLGFPSLGCNNQSLKAFTSIASSLTSEISSDSTSQTLLTTTNPQKSKEYLTPSIVAGTTQFLSLHRSPLNPWAILGGVSDHYFNNNNDKRSGVAHDNYHLGVCSSMKMKKMKGRKKVREPRFCFKTLSADVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCRVKKRVERLGEDPRMVITTYEGRHVHTPSNDLEESQNQSQFENFLW 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03709 235 Gene3D WRKY domain 144 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g03709 235 MobiDBLite consensus disorder prediction 220 235 - -
Vifa6g03709 235 SUPERFAMILY WRKY DNA-binding domain 153 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g03709 235 MobiDBLite consensus disorder prediction 214 235 - -
Vifa6g03709 235 FunFam WRKY transcription factor 57 143 218 - -
Vifa6g03709 235 Pfam WRKY DNA -binding domain 159 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g03709 235 ProSiteProfiles WRKY domain profile. 153 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g03709 235 SMART WRKY_cls 158 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g03709 235 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 60 219 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03709 Vifa-Chr6 1217396170 1217397457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03709 119 235 WRKY Transcription Factor Family AT4G39410 72.131 3.75e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa6g03709 WRKY 1.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03709 - - pvu:PHAVU_002G266400g 267.7