Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03703 ATGGAATCAGATTTTGAGACGAACGATACGCTTACACTGTCACAGGATCCATTCGATGCCAACGACAATGATAATTTGGATGCTGAAGGGGAAAGATGTGGAATATGTATGGATATGGTTATTGACAGGGGAGTATTGGATTGCTGTCAGCACTGGTTCTGTTTTGTATGTATTGACAACTGGGCTACCATCACTAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACCTGTGTTCCAGTATATGATACCATAGGGAGCAATAAAGTCGAAGATGGCTCATTCTTCAGAGACGATGACTGGTCGATTGACGGGAAGAATAACAGTTTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTTACTTGCTTGGATGGCGATGGATGCAAAATTCGAAATGGATTGGCAAGTATTGAAGAAGATTCTGGTCTTGATACATCAATTGCTTGCGATTCATGTGATCTATGGTATCACGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCTGAAAGTACATGGTTATGCCCACGATGCGAGGTTGATGAAGGTTCAAAAAAAACAGATACCAGTTCAATAAAGGAGGCTACCCTGGAGTGTAACCCAGATAATAATAACAGTGAATGTCATGCTGAGGATTCCTTTTCAGGAATAGTGTCTGTTTCCATTGCTGATACTGGAGAGACAGCTGTTGTTGTCTCAATGGTTGACCGAAACAAATGGGTTCCAGAAACAAACGAGAGAGGCCTTTGTCCTCCTGTAGTTGATGGGGATCGGTTGACTGAATCATGTAATTTAATGTCTGATACTAATAATCAGCCGCAGGCACCAGAGAAGACAACTTTGTCACCAATTATGAAGAGAGAAGAACTAGAGCTGTTCTTATCACACCAAACTTCTAAATCCTTCATGCATAATGATTTAAAGAATAGAGATAATGGAACAAGATGTGAGCTGAGTAGCTCTGATGGAACCAAGTTATTTGATGAGTCCCATTCCAAAACTGGTCCATGCAAAACTGAATCTGATATGGGTCTTCATCTGGGTTTATCGCTGGGCTCTTTTTTAACTGTCGATAATGTGGACACGAGCGAAACTAAAGATCAAGCAACTGATGCCCCATGCTCGAGTCCTGAAGATTTTCCTTTGAAAGGAGATGAAATCGAAACCAATGCTTGTGAGGACAGTGCCAGAGTGGCTGGTAGAAAGAGGAAGCATTTTGATTACAGTCATGAGCAAGTTCATACAAAAGCTAACGATGAAGATGCCAAGCCCGAACTATTGGTTGAAGCTTCACAAAAGAAAATTAGAGCAGCTGATAATCAAATTATTAGTGCTAATGACTCGTCTGGCGCTCAACTTTCTGACAATGCTAAGAAAAGTCCTGCTCGAAAACATTCTCCAACAAAGGAGATTGCGGCATCCGATATAATGAATATAGTTAAAGGGACAAACCGTAGGCTTTCCAAGGGACTAGCTGACACTAATGCGAGTGAAAAGTTAGCTGTAAAGAAAGGAAACATGGCTGGATTGAGGGTTAAAAAGATTATGAAAAGAGTTTCTGATGATGGAGAATCATCCTCAGTTGTCCAAAATCTAAGGAAGGAAATTAGAGAGGCTATCCTCAACAAATCCTCCATAAACTTTGAGGATAACCATTTTGATAAAAATCTTCTTGAAGCTTTTAGGGTTGCTATAACAGGGCCTAAAACTGAACTTGTAAATAAATTATCCCCTACAGCTCTGAAGGCAAAGAAGTCAATGTTGCAAAAAGGGAAAGTACGGGAAAATCTAACTAGGAAAATTTTCGCATCATCCAATGGAAGGAGAAAGCGTGCTTGGGATAGGGATTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTTCAAAGCCTGAAAAGATCGAAACTTTAAAATCAGTTCTCGATCTTTTAAGAAAAAGTTCAGAGAATCCAGAATCAGAGCAAACTCCCAGCTGTCAAGCCAAGAATCCAATTCTTTCCAGATTGTACATAGCAGATACATCTGTTTTCCCACGGAAACAAGATGTCAAACCTTTCTCAGAGCAAACTAAACAAAATAACCCTTCAGCAAAAGGAACAAATCAATCTGCTGATAACAAGATTATTAAAGCAACAGAGGTAAATTCCCTCTTATCAAAGACCAAAGTTTGTTCATCTGAGAAAAAAGTAGATAAGAAGATTGTACATGGTCCAGTTGGTAAAGTACATTCGAGCAGTCACTCAGAAGCAACATCAGTATCATCTTCTGCCGGTGCCAAAGTTGGCACAAAGGAGTCAGGCCTTAAATCTGATTCTGTGAAAGGTGATAAAAGAAAATGGGCTTTGGAGGTTCTTGCGAGGAAAACAGCTGTTGGAAGCAAGAGCACAGCAAATGAAAGCCAGGAAGACGATGCAGTTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTACCAACTAACATGCGACCAGCGTTGGCACCTTGTCGCCACAATAAAATTCCTGTATCCGTGAGGCAGGCACAGCTTTACCGCCTGACGGAACGTTTATTGAAGAACGCAAATCTGCCAATCATTCGCAGAACTGCAGACACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAGGAGGTTGCTGACAGATCAAGCAGCAAGCCAGTGTATCTGAATCTTTGTTCACAAGAACTATTGCATCGCACAAATAAAACAAAATCGAATGTAGACCCAGACACAACTCCACCAACCTCGTCTCCAGTGCATACTGATCAATCAGAACTAAATACCGATGATCTTTCGTCTGACCCTGACGTTCAATTAGCGTTGAAAAATGCTGGTCTGTTTGATTCGCCACCAAGCAGTCCACAGAAGAACAATGAAATATGTAACGAAAATGAAGTGTCAGGGCCCAATGATATACTTGAACTAGATTCTCATCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTAGAAGATGACGATTACATATGTGCTAGTGTTACAAAGGTCCCAAATCTAAAACAAGAGCAAAGTGAACCAAAAGTGAAACTTGTTTTCTCCACCACGAGCTTGAAGAAAACAAATAATGATTTGGATTGTGCAGACTGTAAGGGGTCTGAAAACAATGAAGTGCCAGGAGATGCCTCTTGCTCACCAAACTGTCAAAATGATGCAGTGCACAGGGATGCTACCATTGATGCAGAGATTGGCCAGCCTTCGGTTTCTTCTGGGCTTCTACCATGTGAGGATACTGTTGAGCCAGCTGATTCTGAATTTGAAGAATTATATGGCCCTGATAAAGAACCACTTATAAAAAAGTTTCCAGATGGTGAATTACAATCATTGCATGGAGAGGGCAAGACTGAATCTCAAAGTGAGAATAACAACTGCCATAAGGACGAAGAACATGTCTTAGACAAAGCAGTAAATGGTGCTGAATTAGGGAATGAGAATCTCACAGAAAATGTGCTTGTCCCTACCATCACTGACAAATCTTCTAATATATCTGGGACTGATGAAAATAGTCAAAGGAATAAAGAGAAATCTGACATCCCTGCCCAGCAGTCTAACAATGAAAATCAAATAGCAAAGAAGGTAGAAGCCTACATCAAGGAGCATATCAGGCCACTGTGCAAGAGTGGTGTGATCACGGCGGAGCAGTACAGGTGGGCTGTTGCAAAAACAACTGAGAAGGTTATGAAATATCATTGCAAATCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCGGAGCAGTATGTTGAAGCAGCCCAACAGAATAGAAAAAATTGA 3828 0.4054 MESDFETNDTLTLSQDPFDANDNDNLDAEGERCGICMDMVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDGSFFRDDDWSIDGKNNSLSFPSYYIDENAVTCLDGDGCKIRNGLASIEEDSGLDTSIACDSCDLWYHAFCVGFDTEGTSESTWLCPRCEVDEGSKKTDTSSIKEATLECNPDNNNSECHAEDSFSGIVSVSIADTGETAVVVSMVDRNKWVPETNERGLCPPVVDGDRLTESCNLMSDTNNQPQAPEKTTLSPIMKREELELFLSHQTSKSFMHNDLKNRDNGTRCELSSSDGTKLFDESHSKTGPCKTESDMGLHLGLSLGSFLTVDNVDTSETKDQATDAPCSSPEDFPLKGDEIETNACEDSARVAGRKRKHFDYSHEQVHTKANDEDAKPELLVEASQKKIRAADNQIISANDSSGAQLSDNAKKSPARKHSPTKEIAASDIMNIVKGTNRRLSKGLADTNASEKLAVKKGNMAGLRVKKIMKRVSDDGESSSVVQNLRKEIREAILNKSSINFEDNHFDKNLLEAFRVAITGPKTELVNKLSPTALKAKKSMLQKGKVRENLTRKIFASSNGRRKRAWDRDCEIEFWKYRCMRASKPEKIETLKSVLDLLRKSSENPESEQTPSCQAKNPILSRLYIADTSVFPRKQDVKPFSEQTKQNNPSAKGTNQSADNKIIKATEVNSLLSKTKVCSSEKKVDKKIVHGPVGKVHSSSHSEATSVSSSAGAKVGTKESGLKSDSVKGDKRKWALEVLARKTAVGSKSTANESQEDDAVFKGNYPLLAQLPTNMRPALAPCRHNKIPVSVRQAQLYRLTERLLKNANLPIIRRTADTELAVADAINIEKEVADRSSSKPVYLNLCSQELLHRTNKTKSNVDPDTTPPTSSPVHTDQSELNTDDLSSDPDVQLALKNAGLFDSPPSSPQKNNEICNENEVSGPNDILELDSHPELDIYGDFEYDLEDDDYICASVTKVPNLKQEQSEPKVKLVFSTTSLKKTNNDLDCADCKGSENNEVPGDASCSPNCQNDAVHRDATIDAEIGQPSVSSGLLPCEDTVEPADSEFEELYGPDKEPLIKKFPDGELQSLHGEGKTESQSENNNCHKDEEHVLDKAVNGAELGNENLTENVLVPTITDKSSNISGTDENSQRNKEKSDIPAQQSNNENQIAKKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKSKNANFLIKEGEKVKKLAEQYVEAAQQNRKN 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03703 1275 SMART PHD_3 131 183 IPR001965 -
Vifa6g03703 1275 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Vifa6g03703 1275 MobiDBLite consensus disorder prediction 445 460 - -
Vifa6g03703 1275 MobiDBLite consensus disorder prediction 743 778 - -
Vifa6g03703 1275 MobiDBLite consensus disorder prediction 367 388 - -
Vifa6g03703 1275 MobiDBLite consensus disorder prediction 445 475 - -
Vifa6g03703 1275 MobiDBLite consensus disorder prediction 692 712 - -
Vifa6g03703 1275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 190 IPR013083 -
Vifa6g03703 1275 Pfam Ring finger domain 32 72 IPR001841 -
Vifa6g03703 1275 MobiDBLite consensus disorder prediction 905 939 - -
Vifa6g03703 1275 MobiDBLite consensus disorder prediction 749 766 - -
Vifa6g03703 1275 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Vifa6g03703 1275 MobiDBLite consensus disorder prediction 1 22 - -
Vifa6g03703 1275 ProSiteProfiles Zinc finger PHD-type profile. 65 185 IPR019787 -
Vifa6g03703 1275 SMART ring_2 33 71 IPR001841 -
Vifa6g03703 1275 SUPERFAMILY RING/U-box 25 78 - -
Vifa6g03703 1275 PANTHER RING FINGER PROTEIN 41, 151 114 1266 - -
Vifa6g03703 1275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 109 IPR013083 -
Vifa6g03703 1275 MobiDBLite consensus disorder prediction 689 712 - -
Vifa6g03703 1275 SUPERFAMILY FYVE/PHD zinc finger 148 186 IPR011011 -
Vifa6g03703 1275 MobiDBLite consensus disorder prediction 1 21 - -
Vifa6g03703 1275 MobiDBLite consensus disorder prediction 1156 1179 - -
Vifa6g03703 1275 Pfam PHD-finger 148 184 IPR019787 -
Vifa6g03703 1275 MobiDBLite consensus disorder prediction 1156 1199 - -
Vifa6g03703 1275 MobiDBLite consensus disorder prediction 953 970 - -
Vifa6g03703 1275 MobiDBLite consensus disorder prediction 905 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03703 Vifa-Chr6 1214717199 1214727503 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03703 33 84 C3H Transcription Factor Family AT3G58030 37.037 1.01e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa6g03703 PHD 4.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03703 - - gmx:100808102 1836.23