Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03702 ATGGAATCAGATTTTGAGACGAACGATACGCTTACACTGTCACAGGATCCATTCGATGCCAACGACAATGATAATTTGGATGCTGAAGGGGAAAGATGTGGAATATGTATGGATATGGTTATTGACAGGGGAGTATTGGATTGCTGTCAGCACTGGTTCTGTTTTGTATGTATTGACAACTGGGCTACCATCACTAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACCTGTGTTCCAGTATATGATACCATAGGGAGCAATAAAGTCGAAGATGGCTCATTCTTCAGAGACGATGACTGGTCGATTGACGGGAAGAATAACAGTTTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTTACTTGCTTGGATGGCGATGGATGCAAAATTCGAAATGGATTGGCAAGTATTGAAGAAGATTCTGGTCTTGATACATCAATTGCTTGCGATTCATGTGATCTATGGTATCACGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCTGAAAGTACATGGTTATGCCCACGGGTTCGTTTTAGATGCGAGGTTGATGAAGGTTCAAAAAAAACAGATACCAGTTCAATAAAGGAGGCTACCCTGGAGTGTAACCCAGATAATAATAACAGTGAATGTCATGCTGAGGATTCCTTTTCAGGAATAGTGTCTGTTTCCATTGCTGATACTGGAGAGACAGCTGTTGTTGTCTCAATGGTTGACCGAAACAAATGGGTTCCAGAAACAAACGAGAGAGGCCTTTGTCCTCCTGTAGTTGATGGGGATCGGTTGACTGAATCATGTAATTTAATGTCTGATACTAATAATCAGCCGCAGGCACCAGAGAAGACAACTTTGTCACCAATTATGAAGAGAGAAGAACTAGAGCTGTTCTTATCACACCAAACTTCTAAATCCTTCATGCATAATGATTTAAAGAATAGAGATAATGGAACAAGATGTGAGCTGAGTAGCTCTGATGGAACCAAGTTATTTGATGAGTCCCATTCCAAAACTGGTCCATGCAAAACTGAATCTGATATGGGTCTTCATCTGGGTTTATCGCTGGGCTCTTTTTTAACTGTCGATAATGTGGACACGAGCGAAACTAAAGATCAAGCAACTGATGCCCCATGCTCGAGTCCTGAAGATTTTCCTTTGAAAGGAGATGAAATCGAAACCAATGCTTGTGAGGACAGTGCCAGAGTGGCTGGTAGAAAGAGGAAGCATTTTGATTACAGTCATGAGCAAGTTCATACAAAAGCTAACGATGAAGATGCCAAGCCCGAACTATTGGTTGAAGCTTCACAAAAGAAAATTAGAGCAGCTGATAATCAAATTATTAGTGCTAATGACTCGTCTGGCGCTCAACTTTCTGACAATGCTAAGAAAAGTCCTGCTCGAAAACATTCTCCAACAAAGGAGATTGCGGCATCCGATATAATGAATATAGTTAAAGGGACAAACCGTAGGCTTTCCAAGGGACTAGCTGACACTAATGCGAGTGAAAAGTTAGCTGTAAAGAAAGGAAACATGGCTGGATTGAGGGTTAAAAAGATTATGAAAAGAGTTTCTGATGATGGAGAATCATCCTCAGTTGTCCAAAATCTAAGGAAGGAAATTAGAGAGGCTATCCTCAACAAATCCTCCATAAACTTTGAGGATAACCATTTTGATAAAAATCTTCTTGAAGCTTTTAGGGTTGCTATAACAGGGCCTAAAACTGAACTTGTAAATAAATTATCCCCTACAGCTCTGAAGGCAAAGAAGTCAATGTTGCAAAAAGGGAAAGTACGGGAAAATCTAACTAGGAAAATTTTCGCATCATCCAATGGAAGGAGAAAGCGTGCTTGGGATAGGGATTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTTCAAAGCCTGAAAAGATCGAAACTTTAAAATCAGTTCTCGATCTTTTAAGAAAAAGTTCAGAGAATCCAGAATCAGAGCAAACTCCCAGCTGTCAAGCCAAGAATCCAATTCTTTCCAGATTGTACATAGCAGATACATCTGTTTTCCCACGGAAACAAGATGTCAAACCTTTCTCAGAGCAAACTAAACAAAATAACCCTTCAGCAAAAGGAACAAATCAATCTGCTGATAACAAGATTATTAAAGCAACAGAGGTAAATTCCCTCTTATCAAAGACCAAAGTTTGTTCATCTGAGAAAAAAGTAGATAAGAAGATTGTACATGGTCCAGTTGGTAAAGTACATTCGAGCAGTCACTCAGAAGCAACATCAGTATCATCTTCTGCCGGTGCCAAAGTTGGCACAAAGGAGTCAGGCCTTAAATCTGATTCTGTGAAAGGTGATAAAAGAAAATGGGCTTTGGAGGTTCTTGCGAGGAAAACAGCTGTTGGAAGCAAGAGCACAGCAAATGAAAGCCAGGAAGACGATGCAGTTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTACCAACTAACATGCGACCAGCGTTGGCACCTTGTCGCCACAATAAAATTCCTGTATCCGTGAGGCAGGCACAGCTTTACCGCCTGACGGAACGTTTATTGAAGAACGCAAATCTGCCAATCATTCGCAGAACTGCAGACACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAGGAGGTTGCTGACAGATCAAGCAGCAAGCCAGTGTATCTGAATCTTTGTTCACAAGAACTATTGCATCGCACAAATAAAACAAAATCGAATGTAGACCCAGACACAACTCCACCAACCTCGTCTCCAGTGCATACTGATCAATCAGAACTAAATACCGATGATCTTTCGTCTGACCCTGACGTTCAATTAGCGTTGAAAAATGCTGGTCTGTTTGATTCGCCACCAAGCAGTCCACAGAAGAACAATGAAATATGTAACGAAAATGAAGTGTCAGGGCCCAATGATATACTTGAACTAGATTCTCATCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTAGAAGATGACGATTACATATGTGCTAGTGTTACAAAGGTCCCAAATCTAAAACAAGAGCAAAGTGAACCAAAAGTGAAACTTGTTTTCTCCACCACGAGCTTGAAGAAAACAAATAATGATTTGGATTGTGCAGACTGTAAGGGGTCTGAAAACAATGAAGTGCCAGGAGATGCCTCTTGCTCACCAAACTGTCAAAATGATGCAGTGCACAGGGATGCTACCATTGATGCAGAGATTGGCCAGCCTTCGGTTTCTTCTGGGCTTCTACCATGTGAGGATACTGTTGAGCCAGCTGATTCTGAATTTGAAGAATTATATGGCCCTGATAAAGAACCACTTATAAAAAAGTTTCCAGATGGTGAATTACAATCATTGCATGGAGAGGGCAAGACTGAATCTCAAAGTGAGAATAACAACTGCCATAAGGACGAAGAACATGTCTTAGACAAAGCAGTAAATGGTGCTGAATTAGGGAATGAGAATCTCACAGAAAATGTGCTTGTCCCTACCATCACTGACAAATCTTCTAATATATCTGGGACTGATGAAAATAGTCAAAGGAATAAAGAGAAATCTGACATCCCTGCCCAGCAGTCTAACAATGAAAATCAAATAGCAAAGAAGGTAGAAGCCTACATCAAGGAGCATATCAGGCCACTGTGCAAGAGTGGTGTGATCACGGCGGAGCAGTACAGGTGGGCTGTTGCAAAAACAACTGAGAAGGTTATGAAATATCATTGCAAATCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCGGAGCAGTATGTTGAAGCAGCCCAACAGAATAGAAAAAATTGA 3840 0.4055 MESDFETNDTLTLSQDPFDANDNDNLDAEGERCGICMDMVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDGSFFRDDDWSIDGKNNSLSFPSYYIDENAVTCLDGDGCKIRNGLASIEEDSGLDTSIACDSCDLWYHAFCVGFDTEGTSESTWLCPRVRFRCEVDEGSKKTDTSSIKEATLECNPDNNNSECHAEDSFSGIVSVSIADTGETAVVVSMVDRNKWVPETNERGLCPPVVDGDRLTESCNLMSDTNNQPQAPEKTTLSPIMKREELELFLSHQTSKSFMHNDLKNRDNGTRCELSSSDGTKLFDESHSKTGPCKTESDMGLHLGLSLGSFLTVDNVDTSETKDQATDAPCSSPEDFPLKGDEIETNACEDSARVAGRKRKHFDYSHEQVHTKANDEDAKPELLVEASQKKIRAADNQIISANDSSGAQLSDNAKKSPARKHSPTKEIAASDIMNIVKGTNRRLSKGLADTNASEKLAVKKGNMAGLRVKKIMKRVSDDGESSSVVQNLRKEIREAILNKSSINFEDNHFDKNLLEAFRVAITGPKTELVNKLSPTALKAKKSMLQKGKVRENLTRKIFASSNGRRKRAWDRDCEIEFWKYRCMRASKPEKIETLKSVLDLLRKSSENPESEQTPSCQAKNPILSRLYIADTSVFPRKQDVKPFSEQTKQNNPSAKGTNQSADNKIIKATEVNSLLSKTKVCSSEKKVDKKIVHGPVGKVHSSSHSEATSVSSSAGAKVGTKESGLKSDSVKGDKRKWALEVLARKTAVGSKSTANESQEDDAVFKGNYPLLAQLPTNMRPALAPCRHNKIPVSVRQAQLYRLTERLLKNANLPIIRRTADTELAVADAINIEKEVADRSSSKPVYLNLCSQELLHRTNKTKSNVDPDTTPPTSSPVHTDQSELNTDDLSSDPDVQLALKNAGLFDSPPSSPQKNNEICNENEVSGPNDILELDSHPELDIYGDFEYDLEDDDYICASVTKVPNLKQEQSEPKVKLVFSTTSLKKTNNDLDCADCKGSENNEVPGDASCSPNCQNDAVHRDATIDAEIGQPSVSSGLLPCEDTVEPADSEFEELYGPDKEPLIKKFPDGELQSLHGEGKTESQSENNNCHKDEEHVLDKAVNGAELGNENLTENVLVPTITDKSSNISGTDENSQRNKEKSDIPAQQSNNENQIAKKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKSKNANFLIKEGEKVKKLAEQYVEAAQQNRKN 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03702 1279 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Vifa6g03702 1279 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Vifa6g03702 1279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 189 IPR013083 -
Vifa6g03702 1279 SMART PHD_3 131 183 IPR001965 -
Vifa6g03702 1279 MobiDBLite consensus disorder prediction 449 464 - -
Vifa6g03702 1279 MobiDBLite consensus disorder prediction 747 782 - -
Vifa6g03702 1279 MobiDBLite consensus disorder prediction 1 22 - -
Vifa6g03702 1279 MobiDBLite consensus disorder prediction 371 392 - -
Vifa6g03702 1279 MobiDBLite consensus disorder prediction 449 479 - -
Vifa6g03702 1279 SMART ring_2 33 71 IPR001841 -
Vifa6g03702 1279 SUPERFAMILY RING/U-box 25 78 - -
Vifa6g03702 1279 MobiDBLite consensus disorder prediction 696 716 - -
Vifa6g03702 1279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 109 IPR013083 -
Vifa6g03702 1279 MobiDBLite consensus disorder prediction 693 716 - -
Vifa6g03702 1279 PANTHER RING FINGER PROTEIN 41, 151 114 1270 - -
Vifa6g03702 1279 SUPERFAMILY FYVE/PHD zinc finger 148 184 IPR011011 -
Vifa6g03702 1279 MobiDBLite consensus disorder prediction 1 21 - -
Vifa6g03702 1279 MobiDBLite consensus disorder prediction 1160 1183 - -
Vifa6g03702 1279 Pfam Ring finger domain 32 72 IPR001841 -
Vifa6g03702 1279 MobiDBLite consensus disorder prediction 1160 1203 - -
Vifa6g03702 1279 MobiDBLite consensus disorder prediction 957 974 - -
Vifa6g03702 1279 MobiDBLite consensus disorder prediction 909 943 - -
Vifa6g03702 1279 MobiDBLite consensus disorder prediction 753 770 - -
Vifa6g03702 1279 MobiDBLite consensus disorder prediction 909 976 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03702 Vifa-Chr6 1214717199 1214727503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03702 33 84 C3H Transcription Factor Family AT3G58030 37.037 9.72e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03702 6 1214717199 1214727503 Vifa6g03702 6 1214717199 1214727503 ECH