Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03691 ATGGCTTCTTCAACTCTAACACCTCTTATATTTTACATCTTCATTATTCTCCACCTTCAAACTTCTAAAGCCAAACAAACAATATGCAACACCTTATCATGCGGTGATATTGATATCACTTTTCCTTTTGGTTTAAAACAAAGTACTAATCAAATTCAAAATCCTTATTGTAGCTATTATCCAAATCCTTCTTTCCAACTTTCATGCAACAAACAAACACAAACAATCCTTAACCTCCCCAAAACAGACAACTTAATCATCAACAACATCGATTACAAAGTACAAACAATCAAAGTCAACGACCCCAAAGGTTGTCTCCCAAAACGTTACTTAGAAAATAATTTCAACCTTTCCGGTTCACCTTTTAAATTAAACCCGCAAATTTACAGCAGCGATGAAGAAGAACATGATTCGGACATGTTGGTTTTTGTTTCATGGGGAGAGCCTATTGAGGATACAACGTTGTCTGAAACATGTGAGGTGATTTCAAGAGGCCTTGTTCCGTTACGGTGGATGGATTTGACTATGTGGCCTTTTTGGGTTGATCTTAATCGTGATGTTGAGTTGGTTTGGAACAAACCTGGATGTGAGAAATGTGCACTTAATGGTCAAGTTTGTGGATTCTCTAAGTCTGATGATAAGATAAATGGTCTTCAAGTTGAATGCTTCCCTAATCCTTCCAATAGAGGTTTGTCTACAAGTGCCAAATACTCCATATCAATAGGATTGGGACTACCAGGACTTCTATGTCTAGTTGTAATTTTCTGCTTTATACGTGGTAAGATGAGGAGAATGTCACCTCATAATCAAAGAAGCTCAAATCATCCTTCAAGTACAATTTCCTTAGAACCACTTCCTTCTTTTGTAACTGGCCTCGATGGTGCAACTATTGAGAAGTATCCTAAAATTCTCATTGGAGAGAGTGGACGTTTGTTGAAGCCTAGTGACAATACTTGCTCAATTTGTCTATCTGAATATGAACCTAAAGAGACATTGAGAAGTATCCCTGAATGCAACCATTATTTTCATGCTGCTTGTATTGATGAGTGGCTTAAAATGAATGGCACTTGCCCTATATGTAGGAATTCACCAGAGGCATATTCTTCTACGACTCCTTTTTTTTCTTCATTGTTATTATCCCCAAACTCTTCACCATTGACATCTTCACGATGA 1173 0.3725 MASSTLTPLIFYIFIILHLQTSKAKQTICNTLSCGDIDITFPFGLKQSTNQIQNPYCSYYPNPSFQLSCNKQTQTILNLPKTDNLIINNIDYKVQTIKVNDPKGCLPKRYLENNFNLSGSPFKLNPQIYSSDEEEHDSDMLVFVSWGEPIEDTTLSETCEVISRGLVPLRWMDLTMWPFWVDLNRDVELVWNKPGCEKCALNGQVCGFSKSDDKINGLQVECFPNPSNRGLSTSAKYSISIGLGLPGLLCLVVIFCFIRGKMRRMSPHNQRSSNHPSSTISLEPLPSFVTGLDGATIEKYPKILIGESGRLLKPSDNTCSICLSEYEPKETLRSIPECNHYFHAACIDEWLKMNGTCPICRNSPEAYSSTTPFFSSLLLSPNSSPLTSSR 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03691 390 CDD RING-H2_EL5-like 319 361 - -
Vifa6g03691 390 Pfam Wall-associated receptor kinase galacturonan-binding 29 101 IPR025287 GO:0030247
Vifa6g03691 390 SUPERFAMILY RING/U-box 311 367 - -
Vifa6g03691 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 366 IPR013083 -
Vifa6g03691 390 ProSiteProfiles Zinc finger RING-type profile. 319 361 IPR001841 -
Vifa6g03691 390 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 364 IPR046948 -
Vifa6g03691 390 Pfam Ring finger domain 317 361 IPR001841 -
Vifa6g03691 390 SMART ring_2 319 360 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03691 Vifa-Chr6 1211559012 1211560968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03691 24 364 C3H Transcription Factor Family AT2G25410 32.787 1.71e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03691 - - tpra:123915638 486.108