Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03679 ATGGCAAGTCGTTCATCAGCTCCTGAAATTGATATCAAAGCTGAGTATTGTCCAGAAGCTGTGATTGAGTGGTACCGATTAACAGGTTTAGAAGATCGTAAAGAAAGTCTGAAAAGAAAGGATTTGGCTTTGAAAGCAAAACAACATCTGGTTTATTTGAAGTGGGAGTTTTGGTATGTTAACAAAAAGGGTAAGTGGGAATTGCGTTATACTTCACCTCTAAATAGAAAAAATTATATATCTCTTAGAAAGGCGTGTGAGAGTTGTATTCAAGATGGCGGTTGTTCCGCCATGCAGTCTTCAACAAGTGTACAAGTACCATCAACAACAATTTTTGAAGATGGTGGTTCCATCATACCATCAGTAACAATTCCTTCGTCTCCATTAAATTTGAAAAAACGGGTGAGAGATTTTGGAGAAATCGATCAATCAACTTTCAATGAGGATCCTGAAGCCTTTACTTCATTTTCTCTTCAAAAATGTGATGTTACAACAATTCCAGCATCAAAGGTAAATGAGAAACATGTGAGTACTTGTAAATCACAAGTTACTAATTCACTACCTCCTTATAAAAGACAAAAGGTATCAAATATGAGTATAATGGATAAGAATTTAGAGGGTTGTGATCAAAATGAAAAAGTACCAAATGTGAGTATTTTGGAGGATAATTCACAAGTCTCTGGAAAAAGAGAAGAACGGACATTTGTTTCTTGGTTGGATCAAAATGAAAAAGTATCAAATGTGAGTATTTTGGAGGATAATTCACAAGTCTTTGGAAAAAGAGAAGAACGATCATTTGTTTCTTGGTTGGATCAAAATGAAAAAGTACCAAATGTGAGTATTTTGGAGGATAATTCACAAGTCTTTGGAAAAAGAGAAGAACGAACATTTGTTTCTTGGTTGGATCAAAATGAAAAAGTACCAAATGTGAGTATTTTGGAGGATAATTCACAAGTCTTTGGAAAAAGAGAAGAACGGACATTTGTTTCTTGGTTGGATCAAAATGAAAAAGTATCAAATGTGAGTATTTTGGAGGATAATTCACAAGTCTTTGGAAAAAGAGAAGAACGAACATTTGTTTGGTTGGTAAAGAATCGAGTTTTGGTTCCAGGGACTAATGTGTTCTGTCGTGGTAGTAACAATATTGTCAAAATTGGGAGTATAGTTTTTGATGGTATAGTTTGTGATTGTTGTCATGATCATTTCAATATTATTGGATTTCAGACTCATGCTGGCTGCATAAGAAATACTCCGTCCGCTAGTATTATGTTGGAAGACGGAAGGTCATTGTTAGAATGTCAAAGAGAAGCTCTGAATTTGACTTTGCCAATTTGA 1335 0.3468 MASRSSAPEIDIKAEYCPEAVIEWYRLTGLEDRKESLKRKDLALKAKQHLVYLKWEFWYVNKKGKWELRYTSPLNRKNYISLRKACESCIQDGGCSAMQSSTSVQVPSTTIFEDGGSIIPSVTIPSSPLNLKKRVRDFGEIDQSTFNEDPEAFTSFSLQKCDVTTIPASKVNEKHVSTCKSQVTNSLPPYKRQKVSNMSIMDKNLEGCDQNEKVPNVSILEDNSQVSGKREERTFVSWLDQNEKVSNVSILEDNSQVFGKREERSFVSWLDQNEKVPNVSILEDNSQVFGKREERTFVSWLDQNEKVPNVSILEDNSQVFGKREERTFVSWLDQNEKVSNVSILEDNSQVFGKREERTFVWLVKNRVLVPGTNVFCRGSNNIVKIGSIVFDGIVCDCCHDHFNIIGFQTHAGCIRNTPSASIMLEDGRSLLECQREALNLTLPI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03679 444 Pfam Tify domain binding domain 390 437 IPR032308 -
Vifa6g03679 444 PANTHER PHD FINGER PROTEIN 12 15 439 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03679 Vifa-Chr6 1209904208 1209905542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03679 361 437 PHD Transcription Factor Family AT5G58610 43.038 1.57e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03679 - - mtr:25489963 286.574