Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03655 ATGCAAGGTAATTCAAGGTTCAAGGCATTCAAGGCAGGGTTTGTTCGACACGACATACCTGTATCATCAGTATTGAAGGTAAATGAGCAGAAGGTCTGTAATAGATTATTTGGTGGGCAAAGAATTATATTGAGATTCCCGTCTTCTGTGAAAGCATTAAAGCCCTTGAAATGTGATTTAACACCAGCCAGAGGTTCTCTGACATCTGCGAAGCTGAATCTTCCCATTGATATTCCTGACGAACCTCAAACTGAAGTAGACTTGAATCTTTCAGCTAAGTTGTACACTGCTCTGCGGATGTTGCGGCAAGCTTTCTGTAGAGAAGCTGGAGACTCTGTTTATGGTCACCACATATTTGCCAATACCACGTTGCAGCAGATAAGCAAGAAAATACCGAGAACAAAGGAAGAACTTCTTGATATCAATGGCATTGGCAAGGTTAAAATAAACAATTATGGGGATCGGTTACTTGAAACCATCGAGAATACCATATACGAATACTACAATCCAGATAAAAACAGCAGTGGCAGCAAAGGCAACTTTGATTTGGCCAAAAGAAGACGAGAGGCAAATAAAGACCCAGATTCAAATGCCGAGGATGATGAGGTCTTAATCCAAAGCACCGGTCCCTCCAAGAAAAGGACGGTAAAGAAACAAACCAGGAAGGTTGTAATATATGATTCAGAAGAAGAGGAAGATTATTTCCATGGGTGCCTTGATGAGGACCTAGACTGTGTCAACACTGAAAACATCGTAATAGATAAAAATCTTGTACCAACAGGACACAACTGGAGAAAGAAGAAAGATGGAAAAACTGTGAGGGAAGCTCACGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAGAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAAACGGATATGATGCATACAGTATTTGTCCACTACTTGGATGTTAAGATTAACAAGACAAATATTGGTGCAAGTACAGATGCTAATGGGGTTACATCAGATTCCTACAAGGGCATATCTGTGTCATCTGGATTTCCTACAATCTGTTAA 1077 0.4058 MQGNSRFKAFKAGFVRHDIPVSSVLKVNEQKVCNRLFGGQRIILRFPSSVKALKPLKCDLTPARGSLTSAKLNLPIDIPDEPQTEVDLNLSAKLYTALRMLRQAFCREAGDSVYGHHIFANTTLQQISKKIPRTKEELLDINGIGKVKINNYGDRLLETIENTIYEYYNPDKNSSGSKGNFDLAKRRREANKDPDSNAEDDEVLIQSTGPSKKRTVKKQTRKVVIYDSEEEEDYFHGCLDEDLDCVNTENIVIDKNLVPTGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLETDMMHTVFVHYLDVKINKTNIGASTDANGVTSDSYKGISVSSGFPTIC 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03655 358 SMART hrdc7 88 170 IPR002121 GO:0003676
Vifa6g03655 358 SMART CG_1_2 225 325 IPR005559 GO:0003677
Vifa6g03655 358 Pfam HRDC domain 92 160 IPR002121 GO:0003676
Vifa6g03655 358 ProSiteProfiles HRDC domain profile. 88 170 IPR002121 GO:0003676
Vifa6g03655 358 Gene3D HRDC domain 84 168 IPR044876 -
Vifa6g03655 358 SUPERFAMILY HRDC-like 91 164 IPR010997 GO:0000166|GO:0044237
Vifa6g03655 358 MobiDBLite consensus disorder prediction 187 212 - -
Vifa6g03655 358 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 261 335 - -
Vifa6g03655 358 Pfam CG-1 domain 261 323 IPR005559 GO:0003677
Vifa6g03655 358 ProSiteProfiles CG-1 DNA-binding domain profile. 208 330 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03655 Vifa-Chr6 1202550109 1202552622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03655 261 336 CAMTA Transcription Factor Family AT5G64220 76.316 1.93e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03655 K10901 - gmx:100817867 272.322