Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03654 ATGGTTCAAAGAGGTTTTATCCGGATATTTCTCTGTGCGTCTAAACGAGGAATCAAGATTGTGAGGGTTTCACATCAAGGGAATTCTTCTGTGATTCAGACTTTATCATCCATCTTATCATCAGTATTGAAGGTAAATGAGCAGAAGGTCTGTAATAGATTATTTGGTGGGCAAAGAATTATATTGAGATTCCCGTCTTCTGTGAAAGCATCAAAGCCCTTGAAATGTGATTTAACACCAGCCAGAGGTTCTCTGACATCTGCGAAGCTGAATCTTCCTATTGATATTCCTGACAAACCTCAAACTGAAGTAGACTTGAATCTTTCAGCTAAGTTGTACATTGCTCTGCGGATGTTGCGGCAAGCTTTCTGTAGAGAAGCTGGAGACTCTGTTTATGGTCACCACATATTTTCCAATACCACGTTGCAGCAGATAAGCAAGAAAATACCGAGAACAAAGGAAGAACTTTTTGATATCAATGGCATTGGCAAGGTTAAAATAAACAATTATGGGGATCGGTTACTTGAAACCATCGAGAATACCATATACGAATACTACAATCCAGATAAAAACAACAGTGGCAGCAAAGGCAGCTCTGATTCGGCCAAAAGAAGACGAGAGGCAAATAAAGACCCAGATTCAAATGCCGAGGATGATGAGGTCTTAATCCAAAGCACCGGTCCCTCCAAGAAAAGGACGGTAAAGAAACAAACCAGGAAGGTTGTAATATATGATTCAGAAGAAGAGGAAGATTATTTCCATGGGTGCCTTGATGAGGACCTAGACTGTGTCAACACTGAAAACATCGTAATAGATAAATTGGAACATAATCTTGTACCAACAGGACACAACTGGAGAAAGAAGAAAGATGGAAAAACTGTGAGGGAAGCTCACGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAGAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAAACGGATATGATGCATACAGTATTTATCCACTACTTGGATGTTAAGATTAACAAGACAAATATTGGTGCAAGTACAGATGCTAATGGGGTTACATCAGATTCCTACAAGGGCATATCTGTGTCATCTGGATTTCCTGCAATCTGTTAA 1140 0.3991 MVQRGFIRIFLCASKRGIKIVRVSHQGNSSVIQTLSSILSSVLKVNEQKVCNRLFGGQRIILRFPSSVKASKPLKCDLTPARGSLTSAKLNLPIDIPDKPQTEVDLNLSAKLYIALRMLRQAFCREAGDSVYGHHIFSNTTLQQISKKIPRTKEELFDINGIGKVKINNYGDRLLETIENTIYEYYNPDKNNSGSKGSSDSAKRRREANKDPDSNAEDDEVLIQSTGPSKKRTVKKQTRKVVIYDSEEEEDYFHGCLDEDLDCVNTENIVIDKLEHNLVPTGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLETDMMHTVFIHYLDVKINKTNIGASTDANGVTSDSYKGISVSSGFPAIC 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03654 379 MobiDBLite consensus disorder prediction 186 237 - -
Vifa6g03654 379 SUPERFAMILY HRDC-like 109 182 IPR010997 GO:0000166|GO:0044237
Vifa6g03654 379 ProSiteProfiles CG-1 DNA-binding domain profile. 243 351 IPR005559 GO:0003677
Vifa6g03654 379 Pfam HRDC domain 111 178 IPR002121 GO:0003676
Vifa6g03654 379 ProSiteProfiles HRDC domain profile. 106 188 IPR002121 GO:0003676
Vifa6g03654 379 MobiDBLite consensus disorder prediction 199 217 - -
Vifa6g03654 379 SMART hrdc7 106 188 IPR002121 GO:0003676
Vifa6g03654 379 Pfam CG-1 domain 281 344 IPR005559 GO:0003677
Vifa6g03654 379 SMART CG_1_2 243 346 IPR005559 GO:0003677
Vifa6g03654 379 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 282 356 - -
Vifa6g03654 379 Gene3D HRDC domain 102 186 IPR044876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03654 Vifa-Chr6 1202533774 1202536608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03654 282 357 CAMTA Transcription Factor Family AT5G64220 75.000 3.28e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03654 K10901 - gmx:100817867 270.011