Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03653 ATGGCCGATACAGTCGCTGAAATTCCAATTCCCACAAAGAAATCAAGAGGATCCAGAAAGGCTCTCAAGGAGAAAACTCCGTCAGCCAGTGATGCCAATATCATAGCTGCGGAACCAAAGGGAAAAGCTGCATCGAAGAAACAACAACAGCCGAAGCAACAATCATTCGAGCAAGAATTGCTGGAGATGCAGGAGAAATTGAAGCAGTTGCGTCTCGAGAAGGAGAAGACCGACGAACTTTTGAAGCAAAAGGATGAAGAACTCGAAAATCGGGGGAAAGAGCAGGAGAAACTTCAGATTGAACTTAAGAAATTGCAGAAGTTGAAGGAATTTAAACCTATAATGAATTTTCCTATGGTGAAGGATAAGGAACAAGAGAAGAAGGACAAGAAGAAGAAGAATGGATGCTCTGAGACAAAAAGGCCTACTCATGCTTACACGTTATGGGTCAAAGACCAATGGCATGAGGTAAAGAAGGCAAACCCGGAGGCCGAGTTTAAGGACATTTCGAACATACTAGGTGCTAAATGGAAGACAGTTACTGCAGAAGAGAAGAAGCCTTATGAGGAGAAATACCTTGCAGAAAAAGAAGCTTATTTGAAGGTAATTACAAAGGAAAAACGTGAGATTGAGGCAATGAAACTCTTGGAAGAAGAGCAGAAGCAGAAGACTGCTATGGAGTTGCTTGAACAGTATATGCAATTCAAACAAGAGACAGAAAAGGAGAATAAGAACAAGAAGAAGAAAGAGAAGGATCCATTGAAACCAAAGCAACCTTTGTCAGCTTATTTCTTGTTTACAAATGATAGAAGAGCGGCTATTCTTGCAGATAACAAGGGTGTCTTGGAGGTTTCAAAGATCACAGGAGAGGAATGGAAAAACATGACCGAAGAACAAAAGAGGCCTTATGAAGAGATTGCAAAGAAGAATAAGGAGAAATATGCCCAAGAAATGGAGGCATACAAACAGAAAAAAGAAGAGGAGGCTGCAAATATGATGAAAGATGAAGAAGAGCACATGAAACTTCAGAAACATGAAGCCTTGCAAAAGCTCAAGAAGAAGGAGAAAACTGAAAACATGATAAAGGAAACAAAACTGAATCGTCAAAAGAAGAAACTAAGTAAGGATTTTGATCCAAACAGGCCTAAGAGACCTGCTTCCTCGTATATTTTTTTCAGCAAAGAAGCAAGGAAGAGTATACTAGAGGAACGTCCAGAAATTGGAGAAGGCATGCTTAGAACACTGATTTCATTGAAGTGGAAGGATATGAGTGAGAAAGATAAAGAATTGTGGAGTGGCAAAGCATCTGAGGCAATGGAGGAATACAAGAAGGAAATGGAGGAATACAACAAATCTATTGTTGCAAAGTTGTTGGAGAAAACCACCGATGAATAA 1395 0.4 MADTVAEIPIPTKKSRGSRKALKEKTPSASDANIIAAEPKGKAASKKQQQPKQQSFEQELLEMQEKLKQLRLEKEKTDELLKQKDEELENRGKEQEKLQIELKKLQKLKEFKPIMNFPMVKDKEQEKKDKKKKNGCSETKRPTHAYTLWVKDQWHEVKKANPEAEFKDISNILGAKWKTVTAEEKKPYEEKYLAEKEAYLKVITKEKREIEAMKLLEEEQKQKTAMELLEQYMQFKQETEKENKNKKKKEKDPLKPKQPLSAYFLFTNDRRAAILADNKGVLEVSKITGEEWKNMTEEQKRPYEEIAKKNKEKYAQEMEAYKQKKEEEAANMMKDEEEHMKLQKHEALQKLKKKEKTENMIKETKLNRQKKKLSKDFDPNRPKRPASSYIFFSKEARKSILEERPEIGEGMLRTLISLKWKDMSEKDKELWSGKASEAMEEYKKEMEEYNKSIVAKLLEKTTDE 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03653 464 MobiDBLite consensus disorder prediction 116 141 - -
Vifa6g03653 464 SUPERFAMILY HMG-box 379 453 IPR036910 -
Vifa6g03653 464 Gene3D High mobility group box domain 239 338 IPR036910 -
Vifa6g03653 464 MobiDBLite consensus disorder prediction 1 34 - -
Vifa6g03653 464 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 382 450 IPR009071 -
Vifa6g03653 464 MobiDBLite consensus disorder prediction 116 139 - -
Vifa6g03653 464 Pfam HMG (high mobility group) box 382 450 IPR009071 -
Vifa6g03653 464 Pfam HMG (high mobility group) box 139 201 IPR009071 -
Vifa6g03653 464 Pfam HMG (high mobility group) box 256 322 IPR009071 -
Vifa6g03653 464 Coils Coil 53 108 - -
Vifa6g03653 464 Coils Coil 203 252 - -
Vifa6g03653 464 Coils Coil 432 459 - -
Vifa6g03653 464 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 139 207 IPR009071 -
Vifa6g03653 464 SUPERFAMILY HMG-box 243 328 IPR036910 -
Vifa6g03653 464 Coils Coil 304 338 - -
Vifa6g03653 464 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 455 IPR044601 GO:0003677
Vifa6g03653 464 MobiDBLite consensus disorder prediction 349 382 - -
Vifa6g03653 464 SUPERFAMILY HMG-box 126 202 IPR036910 -
Vifa6g03653 464 Gene3D High mobility group box domain 119 208 IPR036910 -
Vifa6g03653 464 SMART hmgende2 381 451 IPR009071 -
Vifa6g03653 464 SMART hmgende2 255 323 IPR009071 -
Vifa6g03653 464 SMART hmgende2 138 208 IPR009071 -
Vifa6g03653 464 MobiDBLite consensus disorder prediction 235 256 - -
Vifa6g03653 464 Gene3D High mobility group box domain 373 452 IPR036910 -
Vifa6g03653 464 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 256 322 IPR009071 -
Vifa6g03653 464 MobiDBLite consensus disorder prediction 349 389 - -
Vifa6g03653 464 CDD HMG-box_AtHMGB6-like_rpt1 140 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03653 Vifa-Chr6 1202316729 1202319044 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vifa6g03653 HMG_box 1.4e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03653 K09273 - gmx:100783033 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03653 6 1202316729 1202319044 Vifa6g03653 6 1202316729 1202319044 ECH