Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03638 ATGTTTACACCTTCCAACATCATCAAACACACTCGTCATTACTTCAAACAAACCAAACTCATCAACAATATCTACAACACGAACCGTCACTATCCCAAAACTGTAAGTATACGTTACACCGACGAAGACGCCACCGATTCTTCCTCCGATGATAACCAACCGTCGCGTCGCAGAGTCAAGACTTTCGTCAACGAGATCACCATGGCCAACAGAGTCATCAAGTCTACACCTACAACTACCACCAGACGTAAAACTAAAACCAAAAATAGAGCTCCGGCTATTCAACGGCTGCCGGTGATTAACTCCGGGAAGAAATACCGGGGAGTGAGACAGAGACCTTGGGGGAAATGGTCGGCAGAGATAAGAGATCATAGAATGCGCATAAGACTGTGGTTAGGAACTTACAATACTGCTGAAGAAGCTGCTAGGGAGTATGATAAAGCTGCTATAAAAATTCGTGGTGCAAATGCGATTACAAATTTTACTCATCCCGTTCAAAACATTAGAAATTTTGATAACATTTCAGGTGAAGAATGTGTAAGCAACAACAACGGTGGATCAGCCACTTCAGTACTTGGTCAGTGTAGTACTTCAGAAAGTGAACAAGAAAAAGTGAAAGATGATGATGTTGTTGTTCCGGTTCCAATGAGTGATGAATGTGAAAATGAATGTTCAGGTGTAGAAAATGATAAAAAGTTGAAATCTGATTCTGAGACAGTTTTTCCGATTCCTTGTGATGGTTTATTTGATGAGTTTGAAAGAAATGATGTATTTGGTAATGAGACATATATGAAAAAAAACATGTTCTTTTTTCCTGGTGATGGTTTCAGTGGCAAATTTGTTGATACTTTGGGTCAGAGTTTGGATTTGAATTGGAACAAAGATTATGGTATTTTTCAGGATATAGGGGATTTGTTTGGTTCAGATTTGGGTACTTCTGTTTGA 945 0.3937 MFTPSNIIKHTRHYFKQTKLINNIYNTNRHYPKTVSIRYTDEDATDSSSDDNQPSRRRVKTFVNEITMANRVIKSTPTTTTRRKTKTKNRAPAIQRLPVINSGKKYRGVRQRPWGKWSAEIRDHRMRIRLWLGTYNTAEEAAREYDKAAIKIRGANAITNFTHPVQNIRNFDNISGEECVSNNNGGSATSVLGQCSTSESEQEKVKDDDVVVPVPMSDECENECSGVENDKKLKSDSETVFPIPCDGLFDEFERNDVFGNETYMKKNMFFFPGDGFSGKFVDTLGQSLDLNWNKDYGIFQDIGDLFGSDLGTSV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03638 314 CDD AP2 104 163 IPR001471 GO:0003700|GO:0006355
Vifa6g03638 314 FunFam Ethylene-responsive transcription factor 2 104 163 - -
Vifa6g03638 314 Gene3D AP2/ERF domain 104 163 IPR036955 GO:0003700|GO:0006355
Vifa6g03638 314 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Vifa6g03638 314 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Vifa6g03638 314 SUPERFAMILY DNA-binding domain 105 163 IPR016177 GO:0003677
Vifa6g03638 314 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 222 - -
Vifa6g03638 314 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Vifa6g03638 314 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Vifa6g03638 314 MobiDBLite consensus disorder prediction 38 57 - -
Vifa6g03638 314 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03638 Vifa-Chr6 1199005287 1199006231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03638 8 309 AP2-EREBP Transcription Factor Family AT4G23750 34.118 1.35e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa6g03638 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03638 - - tpra:123917311 289.656