Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03637 ATGAATCGCTTATCGATTATGATAGATGCTTGTAAGGCCGTTAGAGTGTTAGAAAACCAAAAAAATCACAAAGACAAACCAGTTCGCCGCAAGGAAGAAAAACCGGAAGAACCAGAATTGCCGAAATACAGAGATCGAGCTAAGGAACGTAGAGAAGATCAAAATCCTGATTATGAACAAACTGAACTTGGGTTTCATGCTGTTGCTCCTCCTGGTACCGTTGATATTACGTCATCTGATGCGTATAAGTTATCGATTGAGAAGAGCAAGTACCTTGGAGGTGATGTGGAGCATACACATTTGGTTAAAGGTTTGGATTATGCTTTACTGAACAAAGTAAGGAGTGAAATTAAGAAGCCAGATCTGAGGAAAAAGGTTTTGCCTGCTGTCATCGTTCGTCAACGTAAGCCATGGCGCCGAAAGGACGGTGTCTTCAAGTACTTTGAAGATAACGCTGGTGTCATTGTGAATCCTAAGGGAGAAATGAAAGGTTCTGCTATTACTGGTCCTATTGGTAAGGAGTGTGCTGATCTATGGCCTAGAATCGCAAGTGCTGCCAATGCCATTGTTTGA 573 0.4206 MNRLSIMIDACKAVRVLENQKNHKDKPVRRKEEKPEEPELPKYRDRAKERREDQNPDYEQTELGFHAVAPPGTVDITSSDAYKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIKKPDLRKKVLPAVIVRQRKPWRRKDGVFKYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03637 190 ProSitePatterns Ribosomal protein L14 signature. 129 155 IPR019972 -
Vifa6g03637 190 Hamap 50S ribosomal protein L14 [rplN]. 73 190 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa6g03637 190 Gene3D Ribosomal protein L14 96 190 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vifa6g03637 190 MobiDBLite consensus disorder prediction 19 61 - -
Vifa6g03637 190 SUPERFAMILY Ribosomal protein L14 119 190 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vifa6g03637 190 SMART Ribosomal_L14_2 85 190 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa6g03637 190 Pfam Ribosomal protein L14p/L23e 113 190 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa6g03637 190 MobiDBLite consensus disorder prediction 19 59 - -
Vifa6g03637 190 PANTHER RED PROTEIN IK FACTOR CYTOKINE IK 20 119 IPR039896 -
Vifa6g03637 190 Pfam RED-like protein N-terminal region 21 121 IPR012916 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03637 Vifa-Chr6 1198358347 1198359130 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03637 119 190 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 98.611 1.74e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03637 K13109 - gmx:100775354 180.644