Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03635 ATGAAGTTTCTTCATGTCTCATGTTTTGTTGTTATATGCTTGTTGTGTATGTGGAAAGGAAATTGTGAACCTGTTGAAGATAAAGAGGTTTTGCTTGATTTTGTGAACAAGTTTCCACCTTCAAGGACACTGAATTGGAATGAGAGTTTCTCTGTTTGTGATAATTGGACTGGTGTAACTTGCAATGAGGATAGGTCTAGAGTTATAGCGATTCGGTTACCCGGTGTTGGGTTTCATGGAAATGTTCCACCTCATACTATTAGCAATCTTTCAGAGCTTCAGATTTTGAGTCTTAGATCCAATTTCATTACTGGGTTTTTTCCTTCTGATTTTTCTAATTTGAAAAATTTGTCCTTTCTTTATATGCAGTTTAACAATTTGTCTGGGTCTTTGCCTGATTTTTCAGCTTGGAAGAATCTTACTGTTGTTAATTTGTCTAGTAATAGGTTCAATGGGAGTATTCCTGTTTCGCTTTCGAATTTGACTCAGCTTTCGGGTTTGAACCTTGCGAGTAATGATCTTTCTGGTGATATTCCTGATCTGAATTTGTCGAGGTTTCCTGATTCAGCGTTTGTTGGGAATAATGTAACTCTTGGAAATTATACTGTTGTTCCGCCCGTGCCTTCAACGGTTTATGATGCGTCTTCGACCTCGGGGAAACGTGGGAGGCTAAGTGAAGCGGCGGTGCTTGGAATTGTTGTTGTTGGGAGTTTTCTTGGGCTTGTAGCTTTTGGTTTTCTGATGTTTGTGTGCTGTTGTGCTAGAAAAAAGGATGAAGATGATTTTGATGATGATGCATTTGTTGGAAAGGCGAATAAGGGAAAAATGTCTCCGGAGAAAGCAGTTTCGAGGAACATGGATGCTAATAATAAACTGGCTTTCTTCGAGGGATGTAATTATGCGTTTGATTTAGAAGACTTGTTAAGAGCTTCCGCCGAGGTTCTAGGAAAGGGAACGTTTGGTACTGCTTACAAGGCGATTCTTGAGGATGCGACTGCGGTTGTTGTGAAGAGATTGAAGGAGGTAGCCTATGGAAAGAAGGATTTTGAGCAATACATGGAGATTGTTGGAAGTCTTAAACATGAGAATGTGGTTGAGCTGAAAGCTTATTATTATTCAAAAGACGAGAAACTGATGGTATATGATTACTACAGTCAGGGGAGTGTCTCTTCTTTGTTGCATGGGAAAAGAGGAGAAGACAAGGTGCCTTTAGATTGGAATACTCGGTTGAGAATCGCATTAGGTGCAGCAAGAGGCATTGCTCACATCCATGTTGAGAATAGCGGAAAAGTGGTACACGGAAACATCAAGTCTTCAAATATCTTTCTCAATACTAAGCAATACGGTTGTGTATCTGATCTTGGTCTGGCATCCATTTCAACCTCGCTCGCCCTACCCATCTCACGAGCAGCTGGTTACCGAGCACCAGAAGTTACAGACACGAGGAAAGCAGCACAGCCTTCAGATGTTTACAGCTTCGGCGTCGTGTTACTAGAGCTTCTAACCGGGAAATCACCTATTCACACAGCTGGTGGTGATGAGTTTGTGCACTTGGTGAGATGGGTTCATTCGGTTGTGCGAGAGGAGTGGACGGCTGAAGTATTTGACTTAGAGTTGATGAGATATCCAAATATAGAAGAAGAGATGGTTGAGATGTTGCAGATAGCCATGTCGTGTGTGGTAAGAATGCCGGATCAGAGACCTAAGATGTCCGAAGTTGTGAAGATGATAGAAAATGTGAGGCAGATTGATAATGCACAGATATCATCTGAGAACCAAGCAGAAGTTAGATTATCATCTCAAAGCGAGACCGATAACGACAACATTAACTCCACTTCTTCTCCTCTACCGAAAGGAAGTGAATGA 1866 0.4148 MKFLHVSCFVVICLLCMWKGNCEPVEDKEVLLDFVNKFPPSRTLNWNESFSVCDNWTGVTCNEDRSRVIAIRLPGVGFHGNVPPHTISNLSELQILSLRSNFITGFFPSDFSNLKNLSFLYMQFNNLSGSLPDFSAWKNLTVVNLSSNRFNGSIPVSLSNLTQLSGLNLASNDLSGDIPDLNLSRFPDSAFVGNNVTLGNYTVVPPVPSTVYDASSTSGKRGRLSEAAVLGIVVVGSFLGLVAFGFLMFVCCCARKKDEDDFDDDAFVGKANKGKMSPEKAVSRNMDANNKLAFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATAVVVKRLKEVAYGKKDFEQYMEIVGSLKHENVVELKAYYYSKDEKLMVYDYYSQGSVSSLLHGKRGEDKVPLDWNTRLRIALGAARGIAHIHVENSGKVVHGNIKSSNIFLNTKQYGCVSDLGLASISTSLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTAGGDEFVHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRQIDNAQISSENQAEVRLSSQSETDNDNINSTSSPLPKGSE 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03635 621 Gene3D Transferase(Phosphotransferase) domain 1 385 607 - -
Vifa6g03635 621 Gene3D Phosphorylase Kinase; domain 1 272 383 - -
Vifa6g03635 621 Gene3D Ribonuclease Inhibitor 25 203 IPR032675 -
Vifa6g03635 621 PANTHER OS05G0588300 PROTEIN 9 591 - -
Vifa6g03635 621 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Vifa6g03635 621 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vifa6g03635 621 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 384 591 - -
Vifa6g03635 621 SUPERFAMILY Protein kinase-like (PK-like) 313 578 IPR011009 -
Vifa6g03635 621 ProSiteProfiles Protein kinase domain profile. 309 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03635 621 Pfam Protein kinase domain 312 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03635 621 FunFam pollen receptor-like kinase 1 278 383 - -
Vifa6g03635 621 FunFam Probable inactive receptor kinase RLK902 24 182 - -
Vifa6g03635 621 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Vifa6g03635 621 MobiDBLite consensus disorder prediction 591 621 - -
Vifa6g03635 621 SUPERFAMILY L domain-like 38 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03635 Vifa-Chr6 1197981062 1197983095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03635 17 615 Receptor kinase-like Gene Family AT4G23740 61.624 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa6g03635 Pkinase 2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03635 - - gmx:100804799 939.873