Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03624 ATGGACGATTACACGAGAGAGATGATGGACCTCAAAACCCTCGTGACTCGCACTCTTGAGAAGAAAGGCGTTCTCGCTAGGATCCGAGCTGAATTAAGAGCTAGTGTCTTTGAAGCTATCGAAGAAGAAGATCGTGCCATCGAAAAGGATCAAGCTCTGCCTCCTGTATTGTTAGGTAGCTGTAACGATCGTGCTAAACAGCTTCACGCTTCTCCTTCTGGTAGACTTCTTACTGCACTGGTATGTGAATACCTTGACTGGGCACAGCTTACTCACTCGCTAAAAGTTTATCTTCTAGAATGTAATTTGGAGAAAGATTTTTGGAAGTCTGAGTTGAAAGAGTTTAGTAGCAAAAATGGATATGATCTTAATAGAAATGGAGACAGTCCCGTGCTCTTGGATGTGCTTGAAGGATTCTTGAAATTTGAGAACTTATCCCAAGCAAGGGCTAGTGGTAGGAGGTTTACTACTTCAGAAACTGAGCCTTTGCCAAACTCAGAATCACGGAACACGCGAAGGCATTCTTCATCATCTGTTGCTGGTGGCTTACCTCCACTAGGAAGGTGCATAGCTATACTCATTAATCCTGATGATCCATATGGTAGCTGCAAGCCAGATTTTATACAAGGATGTGAAGAAGATGAACTGAGTAAAAGAAAGGATCTCTATGACTTTGAGGTTTTGATTAACACTGATTGGCCTTTCTCAGATTCTGTGCTTCAAAGGCCTTTTACTGAAGAACTGTGTAAAGAAGCTTGTATGGGAGATTGCATGTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGATGAAGAAGTTACCACTCTCAAATGGGAAAGTTGATCCAACACTAAATGGTGCTAAGGCTTTCTTGAAAGTGAGAAAAGATAATACCTCCCTCCAGTCCTTTGATTTTCCTCCATTTCCAATCATTGCGAACAAGAATAATAATAGGGAAACGTTGGTTTTGGTTGTTTCTGTGCTTTTTGGTAGCTCTGCTATACTCAATGTTGTATTGCTTGTAGCAATATGTTTCAGCACCTCCATGATTGTTCAGTACAAGAAGAAGCTTAGAAGAGTTAGCAGAAGTGAAACTAGTGTTGAAACCAATTTGCGTTGCTTCACTTACGAAGAGCTTGAAGAAGATACTAATGGATTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATAGTTTATGAAGGAGTCGTCAACAACAACACATGTTCCGAAACTCGTGTGGCTGTGAAAAAGTTGAACAATTTTTTGTTGGATCAAGCTCATAGAGAATTCAGGAATGAACTGAATGTCATTGGTCTCACTCATCATAAGAACTTAGTTCGTTTACTTGGATTTTGTGAGGGTGGAAGTGAAAGATTGCTTGTTTATGAGTACATGAGCAATGGCACTTTGGCAAGTTTACTTTTCAATGCTGATGAGAAACAGAAACCAAGTTGGAAACTAAGGCTTGAACTTGCAATAGGAATAGCAAGGGGACTTGTGTATTTACATGAAGAGTGCATTACTAGGATCATCCACTGTGACATAAAGCCTCAAAATATACTTCTTGATGATTACTTCAATGTAAGAATTTCTGACTTTGGACTAGCCAAGTTGATGAACATGAATCAAAGCAAAACCAACACTGGAATTAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCTATCATAGCTCAAGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATGAAGAGAAAGCAATATTAACTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGATGCATTGGTTGAGGGTGACAATGAGGCATTGGATGACAAAGAAAAGTTGGAGAAATTGGTAATGATTGCAATTTGGTGTGTTCAAGAGGATCCAGTTCTTAGACCAAGCATGAGAAATGTGATACATATGCTTGAAGGTACTATTGAAGTGCAAGTTCCACCATACCCCTCACAAATTAGTATTCAATATTCTCTAATTTAA 2058 0.395 MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDRAIEKDQALPPVLLGSCNDRAKQLHASPSGRLLTALVCEYLDWAQLTHSLKVYLLECNLEKDFWKSELKEFSSKNGYDLNRNGDSPVLLDVLEGFLKFENLSQARASGRRFTTSETEPLPNSESRNTRRHSSSSVAGGLPPLGRCIAILINPDDPYGSCKPDFIQGCEEDELSKRKDLYDFEVLINTDWPFSDSVLQRPFTEELCKEACMGDCMCSVAIFRLGDSCWMKKLPLSNGKVDPTLNGAKAFLKVRKDNTSLQSFDFPPFPIIANKNNNRETLVLVVSVLFGSSAILNVVLLVAICFSTSMIVQYKKKLRRVSRSETSVETNLRCFTYEELEEDTNGFDKELGRGAFGIVYEGVVNNNTCSETRVAVKKLNNFLLDQAHREFRNELNVIGLTHHKNLVRLLGFCEGGSERLLVYEYMSNGTLASLLFNADEKQKPSWKLRLELAIGIARGLVYLHEECITRIIHCDIKPQNILLDDYFNVRISDFGLAKLMNMNQSKTNTGIRGTKGYVALEWFKNMPIIAQVDVYSYGVVLLEIISCRRCVQEMEQEDEEKAILTDWAYDCYKDGAVDALVEGDNEALDDKEKLEKLVMIAIWCVQEDPVLRPSMRNVIHMLEGTIEVQVPPYPSQISIQYSLI 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03624 685 MobiDBLite consensus disorder prediction 151 178 - -
Vifa6g03624 685 ProSitePatterns Protein kinases ATP-binding region signature. 392 419 IPR017441 GO:0005524
Vifa6g03624 685 SMART serkin_6 386 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03624 685 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 671 - -
Vifa6g03624 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672|GO:0006468
Vifa6g03624 685 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 193 675 - -
Vifa6g03624 685 Gene3D - 59 138 - -
Vifa6g03624 685 SUPERFAMILY Protein kinase-like (PK-like) 367 676 IPR011009 -
Vifa6g03624 685 Pfam Protein tyrosine and serine/threonine kinase 388 663 IPR001245 GO:0004672|GO:0006468
Vifa6g03624 685 MobiDBLite consensus disorder prediction 151 180 - -
Vifa6g03624 685 FunFam S-receptor-like serine/threonine-protein kinase 355 466 - -
Vifa6g03624 685 Gene3D Phosphorylase Kinase; domain 1 347 466 - -
Vifa6g03624 685 ProSiteProfiles LIS1 homology (LisH) motif profile. 73 105 IPR006594 GO:0005515
Vifa6g03624 685 Gene3D Transferase(Phosphotransferase) domain 1 467 671 - -
Vifa6g03624 685 Pfam LisH 77 103 IPR006594 GO:0005515
Vifa6g03624 685 ProSiteProfiles Protein kinase domain profile. 386 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03624 Vifa-Chr6 1192937814 1192941405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03624 372 675 Receptor kinase-like Gene Family AT1G60800 38.318 1.37e-67 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa6g03624 PK_Tyr_Ser-Thr 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03624 - - vra:106773297 732.25