Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03623 ATGGGTGGCAACTGCAGCACCGGCGCCGGCGCCGGAACCAACACCTCCACCACCACCCACTCCGATCCTCCTAACCAAAAATCCCCCACAATCCTCCCTCAAAACGCCACGCCCTCACCACCTCAACCTCCCTTATCCTCCTCCCTCGGCCGCATCCTCGGCCGCCCCATGGAAGACGTCCGCTCCATCTTCACCTTCGGCCGTGAACTCGGCCGTGGCCAATTCGGCGTTACTTATTTGGTAACCCACAGAGTCACCAAGGAACAATTCGCCTGCAAATCAATCGCCACACGCAAACTCATCAACCGTGACGATATCGATGATGTTCGCCGTGAGGTTCAGATCATGCATCATCTTACCGGCCACCGTAATGTTGTTGAGCTCAAAGGTGCTTATGAGGATCGCCACTCTGTTAACCTTGTGATGGAGGTTTGTGCCGGCGGAGAGCTTTTTGATCGGATAATTATCAAGGGGCATTACTCCGAACGCGCCGCGGCGAATATTTGTAGACAGATTGTTACGGTGGTTCATAATTGTCATAGTATGGGAGTCATGCATAGAGACTTGAAGCCTGAGAATTTCTTGTTCCTTGGTAAGGATGAGAACTCGCCTCTTAAGGCCACTGATTTTGGTCTCTCGGTGTTTTTCAAACCAGGAGATGTGTTCAAAGATCTTGTCGGGAGTGCCTACTACGTCGCCCCTGAAGTGCTGCGTAGAAGTTATGGGCCTGAAGCTGATATTTGGAGTGCCGGAATCATATTATACATTCTGCTTTCTGGTGTTCCCCCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTTGCGTCGGATCCTTGGCCTTCTATATCAAGTAGTGCCAAAGATCTGGTCAAGAAGATGCTACGAGATGACGCCAAAGAACGACTTACAGCAGTTGAAGTACTCAATCATCCTTGGATGAGAGTAGATGGAGATGCTTCTGACAAGCCTCTTGATATCGCCGTTTTAAGCCGAATGAAACAATTCCGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTTATCGCCGAGAATCTTTCTGAAGAAGAAATTATTGGGTTGAAGGAAATGTTCAAATCCATGGATACAGACAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGCCTCCCTAAACTCGGTAGTAAAATGTCCGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCCGATGTGGATGGCAATGGAACCATCGATTATATTGAATTTATAACCGCAACAATGCATATGAATAGAATGGAAAGACAGGATCACTTATATAAAGCCTTTGAATATTTTGACCAAGATAAGAGCGGGTACATCACAAAGGAAGAACTAGAATCTGCTCTTAAGAAGTATAATATGGGTGATGAGAATACAATAAAGGAGATCATTGCCGAGGTCGATACAGATAATGATGCGAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGATATAATAACCCAAAGACGTCGCAAATGA 1548 0.4632 MGGNCSTGAGAGTNTSTTTHSDPPNQKSPTILPQNATPSPPQPPLSSSLGRILGRPMEDVRSIFTFGRELGRGQFGVTYLVTHRVTKEQFACKSIATRKLINRDDIDDVRREVQIMHHLTGHRNVVELKGAYEDRHSVNLVMEVCAGGELFDRIIIKGHYSERAAANICRQIVTVVHNCHSMGVMHRDLKPENFLFLGKDENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGIILYILLSGVPPFWAENEQGIFDAILRGHIDFASDPWPSISSSAKDLVKKMLRDDAKERLTAVEVLNHPWMRVDGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKMSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMERQDHLYKAFEYFDQDKSGYITKEELESALKKYNMGDENTIKEIIAEVDTDNDARINYDEFVAMMRKGNPDIITQRRRK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03623 515 FunFam Calcium-dependent protein kinase 1 330 505 - -
Vifa6g03623 515 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Vifa6g03623 515 MobiDBLite consensus disorder prediction 1 33 - -
Vifa6g03623 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Vifa6g03623 515 SMART serkin_6 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03623 515 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Vifa6g03623 515 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Vifa6g03623 515 Gene3D Transferase(Phosphotransferase) domain 1 150 331 - -
Vifa6g03623 515 MobiDBLite consensus disorder prediction 1 51 - -
Vifa6g03623 515 SUPERFAMILY Protein kinase-like (PK-like) 64 323 IPR011009 -
Vifa6g03623 515 SMART efh_1 369 397 IPR002048 GO:0005509
Vifa6g03623 515 SMART efh_1 405 433 IPR002048 GO:0005509
Vifa6g03623 515 SMART efh_1 441 469 IPR002048 GO:0005509
Vifa6g03623 515 SMART efh_1 476 504 IPR002048 GO:0005509
Vifa6g03623 515 PANTHER SERINE/THREONINE-PROTEIN KINASE 63 497 - -
Vifa6g03623 515 ProSiteProfiles EF-hand calcium-binding domain profile. 473 507 IPR002048 GO:0005509
Vifa6g03623 515 SUPERFAMILY EF-hand 361 502 IPR011992 -
Vifa6g03623 515 CDD STKc_CAMK 64 321 - -
Vifa6g03623 515 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Vifa6g03623 515 Pfam EF-hand domain pair 440 502 IPR002048 GO:0005509
Vifa6g03623 515 Pfam EF-hand domain pair 370 430 IPR002048 GO:0005509
Vifa6g03623 515 ProSiteProfiles EF-hand calcium-binding domain profile. 437 472 IPR002048 GO:0005509
Vifa6g03623 515 Pfam Protein kinase domain 65 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03623 515 ProSiteProfiles Protein kinase domain profile. 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03623 515 Gene3D Phosphorylase Kinase; domain 1 66 149 - -
Vifa6g03623 515 FunFam Calcium-dependent protein kinase 1 66 149 - -
Vifa6g03623 515 FunFam calcium-dependent protein kinase 1 150 329 - -
Vifa6g03623 515 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Vifa6g03623 515 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Vifa6g03623 515 Gene3D - 332 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03623 Vifa-Chr6 1192770304 1192773470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03623 50 514 EF-hand Containing Proteins AT4G23650 80.000 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa6g03623 Pkinase 2.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03623 K13412 - gmx:100777096 893.649