Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03618 ATGGAGCAGAAAACTTTGCTGATATCAGCTGTGAGTGCTAGTGTTGGACTTGGAGTTGGATTAGGATTGGCCAATTCTAGACAAACGGTTTCTAAGTGGGGGCCTAATTACTCTTACTCGTCTTCAAACTCAGTTACTGCTAATCAAATTGAGCAAGAAATGCTTCGGCAAATTATTGATGGCAGAGATAGTACCGTTACTTTCGATAAATTTCCTTATTACTTGAGTGAGGAGACAAGAGTTTTGCTTACGAGTGTTGCTTATGTTCATTTAAAGCATGCTGAAGTTTCTAGATATACTCGTAATCTCGCTCCGGCCAGTAGAACCATTCTTCTCTCAGGACCAGCAGAACTTTACCAGCAGATGCTTGCCAAGGCTTTAGCCCATTACTTTGAGGCCAAGTTACTTCTCTTGGATTTAACTGAGTTTTCATTGAAGATTCAGAGTAAATATGGTTCTCGCAACAAAGAATATTCTTTTAAAAGATCTACTTCAGAGTCAACTTTGGAGAAGCTATTTGGGTCATTTTCAATCTTTTCGCAAAGGGAGGAACCTAAAGGAAAAATGCACAAACAAAGAAGTGGAGTGGACCTACAATCTATGGGTGATGAGACATCTTGTAATCCTCCGAAGCTCCGTAGGAATGCTTGTTCCACCTCAAATATTAGTGGCCTTACTTCTCAAAGCAATCCTACAAATTCAGCTCCTTTGAAGCGCACAGCCAGCTGGTCTTTTGATGAAAAATTACTTATGCAGTCTCTTTACAAGGTTCTACTTTCTGTGTCGAAAACCTATCCCATTGTGCTATATCTGAGGGATGTTGATAGGTTATTATGTAGATCACAAACCATATACAACATGTTCCAAAAAATGTTGAAGAAACTCTCTGGCCCGATTCTGATTCTTGGTTCACGACTTTTAGATTCTAGTAATGACTTTGAAGAGATGGATGAGAAACTTAATTTGCTCTTCCCGTACGATATAGAAATCCAACCTCCAGAAGATGAATCACATCTTGTCAGCTGGAAGTCTCAATTGGAAAAGGATATGAAGATGATACAAGTTCAGGATAACAAGAATCATATCACGGAAGTGCTTGCGGCGAATGATCTTGATTGCGATGACTTGGATTCAATCTGTGTGGAAGACACAGTGATTCTCAGTAACTATATAGAAGAGATTATTGTGTCGGCGATATCTCATCACTTGATGAAAAACAAAGACCTTGAATACAGAAACGGAAAGCTGGTTATTTCTTGCAATAGTTTGTCGCATGCATTGGGTATATTCCGAACGGCAAAATTCAGTGGAAGAGATGCATCAAAATTGGAAGATCAAGCACTAAAGTCTGAGTCTGAGATTCCGAGTGTGGTAAAAACTGTTCCGGAACCAGCAGTGAAGGCAGAAAAGAAAGTTGAAAGTGTTGCTCCTGAAAAGAAAGTTGAAAGTGTTGCTCCTGAAAAGAAGGCTGAAGCAGAAATATCAACATCGGTAGCGAAGGCAGGTGTTGAAAAATTGGTTCCACCGACAAAAACTGCTGAAGTTCCTGCCGATAACGAGTTTGAGAAGCGAATAAGGCCAGAAGTTATACCGGCAAATGAGATTGACGTAACATTCGCGGATATTGGTGCCTTAGAAAAAACAAAAGAATCCCTTCAAGAATTAGTAATGCTTCCTCTCCGAAGGCCAGACCTTTTCACCGGAGGACTTCTAAAACCATGCCGAGGAATATTGCTATTTGGGCCTCCTGGAACTGGGAAAACAATGCTGGCAAAGGCCATTGCAAAGGAAGCTGGAGCAAGTTTCATCAATGTATCCATGTCTACCATTACTTCTAAATGGTTTGGCGAAGATGAGAAAAATGTTCGCGCTTTATTCACACTAGCATCCAAAGTCTCTCCAACTATTATATTCGTCGACGAGGTCGATAGCATGCTTGGGCAACGATCAAGACAAGGGGAGCATGAAGCCATGCGGAAAATAAAAAACGAATTTATGTCTCATTGGGACGGGCTCACGACAAAACAAGGAGAGCGCATCCTTGTTCTTGCAGCAACCAATAGGCCATTTGACTTGGATGAAGCTATTATAAGACGATTCGAAAGGAGAATTATGGTAGGACTACCATCGGTTGAGAACAGGGAAAACATTCTGAGAACTCTTTTGGCAAAAGAAAAAGTCGACCCAGAAATTAATTTTAAGGAACTCGCAACCATGACAGAAGGATATACCGGAAGTGATCTTAAGAATATTTGCACAACCGCGGCTTATAGGCCTGTCAGAGAGTTGATTCAGCAAGAGAGGTTGAAGAATCTGGAGAAGAAACAGAAAGTGACCAAGGGACAGAACAACAATACCCTAGAAGCAGAAGAGGAAGTTCAACAAGATAGAGTTATTACCCTAAGGCCATTGAATATGCAGGATTTCAAAGAGGCCAAGAGTCAGGTTGCTGCAAGCTTTTCTGCTGAGGGTGCTGGAATGGGTGAGTTGACTCAGTGGAATGAGTTGTATGGAGAAGGAGGTTCTAGGAAGCAAAAACAGTTGACATACTTCCTCTGA 2559 0.4119 MEQKTLLISAVSASVGLGVGLGLANSRQTVSKWGPNYSYSSSNSVTANQIEQEMLRQIIDGRDSTVTFDKFPYYLSEETRVLLTSVAYVHLKHAEVSRYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTEFSLKIQSKYGSRNKEYSFKRSTSESTLEKLFGSFSIFSQREEPKGKMHKQRSGVDLQSMGDETSCNPPKLRRNACSTSNISGLTSQSNPTNSAPLKRTASWSFDEKLLMQSLYKVLLSVSKTYPIVLYLRDVDRLLCRSQTIYNMFQKMLKKLSGPILILGSRLLDSSNDFEEMDEKLNLLFPYDIEIQPPEDESHLVSWKSQLEKDMKMIQVQDNKNHITEVLAANDLDCDDLDSICVEDTVILSNYIEEIIVSAISHHLMKNKDLEYRNGKLVISCNSLSHALGIFRTAKFSGRDASKLEDQALKSESEIPSVVKTVPEPAVKAEKKVESVAPEKKVESVAPEKKAEAEISTSVAKAGVEKLVPPTKTAEVPADNEFEKRIRPEVIPANEIDVTFADIGALEKTKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQRSRQGEHEAMRKIKNEFMSHWDGLTTKQGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENRENILRTLLAKEKVDPEINFKELATMTEGYTGSDLKNICTTAAYRPVRELIQQERLKNLEKKQKVTKGQNNNTLEAEEEVQQDRVITLRPLNMQDFKEAKSQVAASFSAEGAGMGELTQWNELYGEGGSRKQKQLTYFL 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03618 852 Pfam AAA+ lid domain 731 773 IPR041569 -
Vifa6g03618 852 Pfam ATPase family associated with various cellular activities (AAA) 577 707 IPR003959 GO:0005524|GO:0016887
Vifa6g03618 852 ProSitePatterns AAA-protein family signature. 680 699 IPR003960 GO:0005524|GO:0016887
Vifa6g03618 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 776 IPR027417 -
Vifa6g03618 852 Gene3D - 536 823 IPR027417 -
Vifa6g03618 852 MobiDBLite consensus disorder prediction 198 237 - -
Vifa6g03618 852 MobiDBLite consensus disorder prediction 184 237 - -
Vifa6g03618 852 Gene3D - 49 355 IPR027417 -
Vifa6g03618 852 SMART AAA_5 573 710 IPR003593 GO:0016887
Vifa6g03618 852 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 49 851 - -
Vifa6g03618 852 Gene3D - 709 814 - -
Vifa6g03618 852 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 536 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03618 Vifa-Chr6 1191723706 1191728428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03618 537 780 Calmodulin-binding Proteins AT3G56690 37.652 7.17e-44 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03618 - - gmx:100807464 1318.14