Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03617 ATGGAGCAGAAAACTTTGCTGATATCAGCTGTGAGTGCTAGTGTTGGACTTGGAGTTGGATTAGGATTGGCCAATTCTAGACAAACGGTTTCTAAGTGGGGGCCTAATTACTCTTACTCGTCTTCAAACTCAGTTACTGCTAATCAAATTGAGCAAGAAATGCTTCGGCAAATTATTGATGGCAGAGATAGTACCGTTACTTTCGATAAATTTCCTTATTACTTGAGTGAGGAGACAAGAGTTTTGCTTACGAGTGTTGCTTATGTTCATTTAAAGCATGCTGAAGTTTCTAGATATACTCGTAATCTCGCTCCGGCCAGTAGAACCATTCTTCTCTCAGGACCAGCAGAACTTTACCAGCAGATGCTTGCCAAGGCTTTAGCCCATTACTTTGAGGCCAAGTTACTTCTCTTGGATTTAACTGAGTTTTCATTGAAGATTCAGAGTAAATATGGTTCTCGCAACAAAGAATATTCTTTTAAAAGATCTACTTCAGAGTCAACTTTGGAGAAGCTATTTGGGTCATTTTCAATCTTTTCGCAAAGGGAGGAACCTAAAGTGGCAGGAAAAATGCACAAACAAAGAAGTGGAGTGGACCTACAATCTATGGGTGATGAGACATCTTGTAATCCTCCGAAGCTCCGTAGGAATGCTTGTTCCACCTCAAATATTAGTGGCCTTACTTCTCAAAGCAATCCTACAAATTCAGCTCCTTTGAAGCGCACAGCCAGCTGGTCTTTTGATGAAAAATTACTTATGCAGTCTCTTTACAAGGTTCTACTTTCTGTGTCGAAAACCTATCCCATTGTGCTATATCTGAGGGATGTTGATAGGTTATTATGTAGATCACAAACCATATACAACATGTTCCAAAAAATGTTGAAGAAACTCTCTGGCCCGATTCTGATTCTTGGTTCACGACTTTTAGATTCTAGTAATGACTTTGAAGAGATGGATGAGAAACTTAATTTGCTCTTCCCGTACGATATAGAAATCCAACCTCCAGAAGATGAATCACATCTTGTCAGCTGGAAGTCTCAATTGGAAAAGGATATGAAGATGATACAAGTTCAGGATAACAAGAATCATATCACGGAAGTGCTTGCGGCGAATGATCTTGATTGCGATGACTTGGATTCAATCTGTGTGGAAGACACAGTGATTCTCAGTAACTATATAGAAGAGATTATTGTGTCGGCGATATCTCATCACTTGATGAAAAACAAAGACCTTGAATACAGAAACGGAAAGCTGGTTATTTCTTGCAATAGTTTGTCGCATGCATTGGGTATATTCCGAACGGCAAAATTCAGTGGAAGAGATGCATCAAAATTGGAAGATCAAGCACTAAAGTCTGAGTCTGAGATTCCGAGTGTGGTAAAAACTGTTCCGGAACCAGCAGTGAAGGCAGAAAAGAAAGTTGAAAGTGTTGCTCCTGAAAAGAAAGTTGAAAGTGTTGCTCCTGAAAAGAAGGCTGAAGCAGAAATATCAACATCGGTAGCGAAGGCAGGTGTTGAAAAATTGGTTCCACCGACAAAAACTGCTGAAGTTCCTGCCGATAACGAGTTTGAGAAGCGAATAAGGCCAGAAGTTATACCGGCAAATGAGATTGACGTAACATTCGCGGATATTGGTGCCTTAGAAAAAACAAAAGAATCCCTTCAAGAATTAGTAATGCTTCCTCTCCGAAGGCCAGACCTTTTCACCGGAGGACTTCTAAAACCATGCCGAGGAATATTGCTATTTGGGCCTCCTGGAACTGGGAAAACAATGCTGGCAAAGGCCATTGCAAAGGAAGCTGGAGCAAGTTTCATCAATGTATCCATGTCTACCATTACTTCTAAATGGTTTGGCGAAGATGAGAAAAATGTTCGCGCTTTATTCACACTAGCATCCAAAGTCTCTCCAACTATTATATTCGTCGACGAGGTCGATAGCATGCTTGGGCAACGATCAAGACAAGGGGAGCATGAAGCCATGCGGAAAATAAAAAACGAATTTATGTCTCATTGGGACGGGCTCACGACAAAACAAGGAGAGCGCATCCTTGTTCTTGCAGCAACCAATAGGCCATTTGACTTGGATGAAGCTATTATAAGACGATTCGAAAGGAGAATTATGGTAGGACTACCATCGGTTGAGAACAGGGAAAACATTCTGAGAACTCTTTTGGCAAAAGAAAAAGTCGACCCAGAAATTAATTTTAAGGAACTCGCAACCATGACAGAAGGATATACCGGAAGTGATCTTAAGAATATTTGCACAACCGCGGCTTATAGGCCTGTCAGAGAGTTGATTCAGCAAGAGAGGTTGAAGAATCTGGAGAAGAAACAGAAAGTGACCAAGGGACAGAACAACAATACCCTAGAAGCAGAAGAGGAAGTTCAACAAGATAGAGTTATTACCCTAAGGCCATTGAATATGCAGGATTTCAAAGAGGCCAAGAGTCAGGTTGCTGCAAGCTTTTCTGCTGAGGGTGCTGGAATGGGTGAGTTGACTCAGTGGAATGAGTTGTATGGAGAAGGAGGTTCTAGGAAGCAAAAACAGTTGACATACTTCCTCTGA 2565 0.4125 MEQKTLLISAVSASVGLGVGLGLANSRQTVSKWGPNYSYSSSNSVTANQIEQEMLRQIIDGRDSTVTFDKFPYYLSEETRVLLTSVAYVHLKHAEVSRYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTEFSLKIQSKYGSRNKEYSFKRSTSESTLEKLFGSFSIFSQREEPKVAGKMHKQRSGVDLQSMGDETSCNPPKLRRNACSTSNISGLTSQSNPTNSAPLKRTASWSFDEKLLMQSLYKVLLSVSKTYPIVLYLRDVDRLLCRSQTIYNMFQKMLKKLSGPILILGSRLLDSSNDFEEMDEKLNLLFPYDIEIQPPEDESHLVSWKSQLEKDMKMIQVQDNKNHITEVLAANDLDCDDLDSICVEDTVILSNYIEEIIVSAISHHLMKNKDLEYRNGKLVISCNSLSHALGIFRTAKFSGRDASKLEDQALKSESEIPSVVKTVPEPAVKAEKKVESVAPEKKVESVAPEKKAEAEISTSVAKAGVEKLVPPTKTAEVPADNEFEKRIRPEVIPANEIDVTFADIGALEKTKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQRSRQGEHEAMRKIKNEFMSHWDGLTTKQGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENRENILRTLLAKEKVDPEINFKELATMTEGYTGSDLKNICTTAAYRPVRELIQQERLKNLEKKQKVTKGQNNNTLEAEEEVQQDRVITLRPLNMQDFKEAKSQVAASFSAEGAGMGELTQWNELYGEGGSRKQKQLTYFL 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03617 854 Gene3D - 538 825 IPR027417 -
Vifa6g03617 854 MobiDBLite consensus disorder prediction 200 215 - -
Vifa6g03617 854 MobiDBLite consensus disorder prediction 195 215 - -
Vifa6g03617 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 778 IPR027417 -
Vifa6g03617 854 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 538 713 - -
Vifa6g03617 854 SMART AAA_5 575 712 IPR003593 GO:0016887
Vifa6g03617 854 ProSitePatterns AAA-protein family signature. 682 701 IPR003960 GO:0005524|GO:0016887
Vifa6g03617 854 Pfam ATPase family associated with various cellular activities (AAA) 579 709 IPR003959 GO:0005524|GO:0016887
Vifa6g03617 854 Gene3D - 711 816 - -
Vifa6g03617 854 MobiDBLite consensus disorder prediction 220 239 - -
Vifa6g03617 854 Pfam AAA+ lid domain 733 775 IPR041569 -
Vifa6g03617 854 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 49 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03617 Vifa-Chr6 1191723706 1191728428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03617 539 782 Calmodulin-binding Proteins AT3G56690 37.652 6.83e-44 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03617 - - gmx:100807464 1313.13