Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03607 ATGGATGAGCTTGCATTCTTTATGGATTGGGATTTGGAAGCTATCAATGAAACTCCAACAACCAACAACACCAACACTTATTTTTCTCAATTATTTTCTGATTTACAACATGATGAGGACTTATTGTTTCACAATTTTCCAGAATTTTCAGAAACCGCTAATGTTCTTATTGATGAGTTTCAAGAACTTTGTAAACCTTTCTACCCTCTTTCATCTCAAACTATTCTTACAAACTCTATGATTGTCCCTAAACAGCTTGAAGAACTCAAAGAAATTCAAGTATCAGATGAGAAAGTAGCTTCTCAAGATCCGCAAGTTTCTGCAGTTTCTAAATATATAAAAAGCAAGAAAAAGAAGAACAAGAGTACAGTGAAGAAAGTAACAGCAATGGATGGAACTCTTTGTGATGCATGGGCATGGAGAAAATATGGACAAAAACCAATAAAGGGTTCACCATATCCACGAAGCTACTACAGATGCAGCAGTTCGAAAGGATGTTCAGCAAAGAAACAGGTTGAAAAGAATCATTTAGATCCAAGAGTTTATTTGGTTACATACAGTGCAGAACACAATCATCCTCAACCAACTCGAAGAAATTCGTTAGCCGGAAGCAGTAGGAAGAACAATCTCTTAGCTACTCATTCTTCAACAGCACCATTGATGAAAATTGAAGATGAGGTAACTGTGATGACAAGTGTGCAGAAGATGGAGAAAGATGAGGAAGATCAGCATCTTCTTGAATGGTTGGAGGGTGCTCAGTTATGTGATGATGGTTGGATTCCAAAGAAAGAGTTAGATGAATATTTCATTGGACAAGACAAGTACCAATAA 831 0.3658 MDELAFFMDWDLEAINETPTTNNTNTYFSQLFSDLQHDEDLLFHNFPEFSETANVLIDEFQELCKPFYPLSSQTILTNSMIVPKQLEELKEIQVSDEKVASQDPQVSAVSKYIKSKKKKNKSTVKKVTAMDGTLCDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCSAKKQVEKNHLDPRVYLVTYSAEHNHPQPTRRNSLAGSSRKNNLLATHSSTAPLMKIEDEVTVMTSVQKMEKDEEDQHLLEWLEGAQLCDDGWIPKKELDEYFIGQDKYQ 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03607 276 SMART WRKY_cls 134 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g03607 276 Pfam WRKY DNA -binding domain 136 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g03607 276 ProSiteProfiles WRKY domain profile. 129 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g03607 276 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 59 218 IPR044810 GO:0003700
Vifa6g03607 276 SUPERFAMILY WRKY DNA-binding domain 133 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g03607 276 Gene3D WRKY domain 115 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03607 Vifa-Chr6 1185902725 1185903761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03607 1 256 WRKY Transcription Factor Family AT4G23550 39.510 1.95e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa6g03607 WRKY 1.5e-24 CL0274