Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03592 ATGGGTCACCATTCTTGCTGCAATCAACAGAAGGTTAAGAGAGGTCTTTGGTCCCCTGAAGAAGATGAAAAACTCATCACTTACATTACCACTCATGGCTATGGTTGTTGGAGTGAAGTTCCTGATAAAGCTGGGCTTCAAAGATGTGGTAAGAGTTGTAGATTGAGATGGATAAATTATTTGAGACCTGATATAAGAAGAGGAAGATTTTCACTTGATGAAGAGAAATTGATTATTAGCCTTCACAATGTTGTAGGCAACAGATGGGCTCACATTGCAAGCCATTTACCTGGTAGAACTGACAACGAAATAAAGAACTACTGGAATTCATGGATCAAAAAGAAAATCAGAAAGCATAACTCACCTTCTAATTCGTCAACCACCACCAATATTACACAAAACCATGTTCTTGATTATAATTTCAATATCAATAAACTAGATCAGAATATTGTAACAACACCAAAACCATCACCATTTCAAGAAACAACCTTGTTTTCTCCCACATGTCCTTTGTTTATGTTCGAGCCTAATTCACTACACGGAACAACAACAACAGCAACAACAACAGCAGCAGCAGCAGAAGCAATACAAAGTAGTAGTAATAATCTCCAAACCGATCAATACTTCCAAGATTCTTTACTAGGTTTGAACTCAGAAACATGGAATCAAGTTCAATCATCTTCACTACCTCCTCCAATATCAACAATTTTTACAATGGACACAATGAATTATCTACCACCTTTGATAGAGAATGTGGAAAACATGGTGGATGAGGAAGTCGGCGATCATCAACAAGTACAAGAGATGAATAACATTGATCAATGGCATCATCAACAATATCCTAACAACAACTTTCTTTTCTGGGACAACATTGTTCATCTCAGTGGGGAAGAACAACAGCTAGCACCAAATTCATCATCAAATATGGGAACAAACAGTACAACACTTTCTCCTTTTCCTTCTTCATCTTTTTGA 975 0.3703 MGHHSCCNQQKVKRGLWSPEEDEKLITYITTHGYGCWSEVPDKAGLQRCGKSCRLRWINYLRPDIRRGRFSLDEEKLIISLHNVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKHNSPSNSSTTTNITQNHVLDYNFNINKLDQNIVTTPKPSPFQETTLFSPTCPLFMFEPNSLHGTTTTATTTAAAAEAIQSSSNNLQTDQYFQDSLLGLNSETWNQVQSSSLPPPISTIFTMDTMNYLPPLIENVENMVDEEVGDHQQVQEMNNIDQWHHQQYPNNNFLFWDNIVHLSGEEQQLAPNSSSNMGTNSTTLSPFPSSSF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03592 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa6g03592 324 CDD SANT 69 112 IPR001005 -
Vifa6g03592 324 FunFam Transcription factor MYB26 68 138 - -
Vifa6g03592 324 MobiDBLite consensus disorder prediction 300 324 - -
Vifa6g03592 324 Gene3D - 69 138 - -
Vifa6g03592 324 CDD SANT 17 61 IPR001005 -
Vifa6g03592 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa6g03592 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa6g03592 324 SMART sant 66 114 IPR001005 -
Vifa6g03592 324 SMART sant 13 63 IPR001005 -
Vifa6g03592 324 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vifa6g03592 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa6g03592 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa6g03592 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa6g03592 324 FunFam MYB transcription factor 6 66 - -
Vifa6g03592 324 Gene3D - 6 66 - -
Vifa6g03592 324 PANTHER MYB DOMAIN PROTEIN 55 1 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03592 Vifa-Chr6 1179505050 1179506606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03592 1 310 MYB Transcription Factor Family AT1G63910 46.685 2.43e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa6g03592 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03592 K09422 K02947 gmx:100797787 359.762