Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03588 ATGGGCATATGCTGCTGCCGTACAGTGAATCAAAACTATGCAAATATTCTTTTGATGCTTTTACGTCTTCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTTTCGCTATATGTTTTGTCTGCAATAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTTTGGCAAGCCATGGCAGTTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGATATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTCTACAGCTTGACTTCCAGCTTCCTGATCGTTTTAGAGCACTACAAGGGTAA 456 0.4101 MGICCCRTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTFAICFVCNRPENKLGDDETWDRAESALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFRALQG 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03588 151 PANTHER THREONINE-TRNA LIGASE 65 147 - -
Vifa6g03588 151 Gene3D Bira Bifunctional Protein; Domain 2 42 149 IPR045864 -
Vifa6g03588 151 SUPERFAMILY Class II aaRS and biotin synthetases 55 147 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03588 Vifa-Chr6 1179124306 1179125860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03588 8 77 RAD5 or RAD16-like Gene Family AT1G50410 68.571 1.49e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03588 K01868 - gmx:100812652 140.198