Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03586 ATGGCTAGACAACTCTGTGAAGATGAAAAAACATCAAGTGGTGGATTTTGTTATAACCCACAAATCCAAGGTTTTGTGTCGGATCCAGAGATGTTCAATCTCACAACAGGCATGGAGATGATAGGGTTTTCAAAACATCTTCATCATCATCAACAACAACAACATAGTACAGACACAAACATGTGGAAAACAAATTTCTCAGAAAAACTAAGTCAACAACATGTTGGTCTTTCACCTTCCTATCATCATCCTGAACAACATCATCAACATCATCATCACCATCATCATCAAGATTTCACTGTTTCTGAAACAACAAGTAACGATCATCAAAACCTAAACATGCTTCATCATCAACATCATCATCAACCTCATCAAGATTCATCTTCTTCTTCACAGTGGCAACAACAAGTTGACGATTCATCACTAAGATGTGTTTTCCCTTGTGAAGGTAACGAAAGACCAAGTCAAGGACTTTCACTCTCTCTTAGTTCAACAAACCCTTCATCTCTAGTTTTACAATCTTTTGAATTAAGAAACACTCATCAAATCCAAGATCAAGGCTATCAAGGTCATTTCCTTCTCAAAAACTCAAAGTTCTTACTACCAGCTCAACAACTTCTCAACGAGCTTTGTAGCTTAGAAACCACAAAACAAAATGATCTCGTTTCACAAAAACAAAAATCTCAAAAATTCAACAACAAACAAAATTTTGAAGAACAAGATGTTCACAATGGTGCCACCACTTCCTCCATCAAACATTCCTTAACCTCCGTCGAGTTCGTCGAACTCCAGAAGAGAAAAACTAAGCTACTTTCCATGCTCGAAGAGGTGGATAGAAGGTACAAGAACTATTGTAACCAAATGAAGAGTGTGGTATCATCATTTGAAGGAGTAGCTGGAAATGGAGCTGCAAAAGTTTACTCAGCATTAGCATTAAAAGCCATGTCAAGACATTTTAGGTGTTTAAAAGATGGAATAATGGAACAAATTGAAAGAACAAGAAAAGCAATGGGAGAAAAAGACCCTATTGCACCTGGAACAACAAAGGGTGAAACACCTAGGCTCAAAATTCTCGACAGAGTTCTAAGACAACAAAGAGCATTCCAACAAATTAACATCATGGAAACACATCCTTGGCGACCTCAGCGCGGTCTCCCCGAACGATCTGTCTCGGTTCTTCGAGCCTGGCTCTTCGAACACTTTCTTCACCCGTATCCAAGTGACGTTGATAAACATATTTTGGCCCGCCAAACCGGTCTCTCAAGAAGCCAGGTATCAAATTGGTTTATTAATGCAAGAGTGAGACTATGGAAGCCAATGGTGGAAGAAATGTATTTAGAAGAAGAGAAAGAGCAACAAAGAAACACGACAACCTCGGAGGGAGGAAACAACATTAATCATGAAGAGGAGAATCTTAATGTGGTTCAAGATCAATCTCCAAGACAACAACTTCATGAAGATCAAAAGCCGCGACTAGTTAGAATTGATTCTGAATGTGTCTCATCTATCATCAACAACGATCATAAAAGCGAGGCGGACAAGAATTATCTTCATCAACATCAATTAGCCGCGGACGCGTTTGGATCGGTTGATATTGATTTTTCTTCTTACGATACACATCATTCATCTGATCATATGGTTACTGGTTATGCTAGTGGGGAGAGTTTCCATCACGGTGGTGGTAACGGCGGTGGAGTTTCGTTGACGTTAGGGTTACAACAACATGGTGGGAATGGAGTGAGTTTGGCTTTTCCTTCAACTACAGAAAGTTCAATGTTTTATACAAGGGAACAAATTGAAGAGCCTGTTCAGTATTCTCTTTTGGATGGTGAAGGAACAAATATCATGCCGTATAGGAATCTAATGGGGACACAATTGCTACATGACTTAGCATGA 1896 0.3929 MARQLCEDEKTSSGGFCYNPQIQGFVSDPEMFNLTTGMEMIGFSKHLHHHQQQQHSTDTNMWKTNFSEKLSQQHVGLSPSYHHPEQHHQHHHHHHHQDFTVSETTSNDHQNLNMLHHQHHHQPHQDSSSSSQWQQQVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSLVLQSFELRNTHQIQDQGYQGHFLLKNSKFLLPAQQLLNELCSLETTKQNDLVSQKQKSQKFNNKQNFEEQDVHNGATTSSIKHSLTSVEFVELQKRKTKLLSMLEEVDRRYKNYCNQMKSVVSSFEGVAGNGAAKVYSALALKAMSRHFRCLKDGIMEQIERTRKAMGEKDPIAPGTTKGETPRLKILDRVLRQQRAFQQINIMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEQQRNTTTSEGGNNINHEEENLNVVQDQSPRQQLHEDQKPRLVRIDSECVSSIINNDHKSEADKNYLHQHQLAADAFGSVDIDFSSYDTHHSSDHMVTGYASGESFHHGGGNGGGVSLTLGLQQHGGNGVSLAFPSTTESSMFYTREQIEEPVQYSLLDGEGTNIMPYRNLMGTQLLHDLA 631
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03586 631 SUPERFAMILY Homeodomain-like 380 445 IPR009057 -
Vifa6g03586 631 MobiDBLite consensus disorder prediction 72 106 - -
Vifa6g03586 631 Gene3D - 382 460 - -
Vifa6g03586 631 SMART HOX_1 379 443 IPR001356 GO:0003677
Vifa6g03586 631 CDD homeodomain 379 440 IPR001356 GO:0003677
Vifa6g03586 631 ProSiteProfiles 'Homeobox' domain profile. 376 439 IPR001356 GO:0003677
Vifa6g03586 631 SMART prehox3 188 328 IPR006563 -
Vifa6g03586 631 Pfam Associated with HOX 194 326 IPR006563 -
Vifa6g03586 631 FunFam BEL1-like homeodomain protein 4 382 444 - -
Vifa6g03586 631 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 109 462 - -
Vifa6g03586 631 Pfam Homeobox KN domain 396 435 IPR008422 GO:0003677|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa6g03586 Vifa-Chr6 1177333047 1177335760 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03586 86 631 Homeobox Transcription Factor Family AT5G41410 44.855 7.54e-131 396
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vifa6g03586 POX 9.9e-46 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03586 - - tpra:123913365 925.62