Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03585 ATGACTACAGGATCATCGGTCTACTCTACCTCAATTCACCATTTCGAACTTTATACAGAAGGTTTTTCCGTACCAGCTCCTTCTACCTATACCTCAGTTGAAGCACCTAAAGGAGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTCCCTACCGTCGTAAAATAAGAGCACCTGGCTCTGCCCATTCACAAGGACTCGATTCTATGTCCAAACATCACATGCCAGCAGATGTGGTCACCATCATAGGTACTCAAGATATTGTGTCTGGAGAGGTGGTAGATAGGACTGCTAGTTGCTCGATCAGGACCCTAGCTTTATTGCGAGCCAAAAACCTTGATGGATTCCCCTTTTGCGGCATTACCCCGGTAAAATTAATTTTAAAAAAATTTGGAATTCTCTTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAATGAGATTCAAGCTGGGGAATTAGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCGTTGAATCTTAAGAATGAAAATGTCGGAATTGTTGTCTTTGGTAGTGATACCTCTTTCAAAGAAGGAGGTCTTATCAAACGTACTGGATCTATTGTAGATGTTCCTGTGGGAAAGGATATGCTAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATAGAACGTAAATCAGTGCACGAGCCTATGCAAACTGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGTCGTGGTCAACGAGAACTTATAATCAGGGACCGACAGACTGGAAAAACAACTATAGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCGCTTCAGATCCAGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTACGCGATAATGGAATGCATGCATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCAAAACGGTCGGACCAGACAGGCGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTTATCTCCATTACGGTTGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACATCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTTAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTTCTCAAAAAATCCCACTGATATTCCTCGTAGGAATACTTTTGGGGGAAATATATATATTAAATTCCTTTCTTTCTAAAGCATTAACCGCCGCGGGTGCCCGTGCCCTTTTTTCTTTTTTAGTAAAAAAGGGGTTACCCGGAAGGCTCGCCCATTCCCTTGGATTCATATTAAAAATACTTTTTCCGACACAGATACTTAATTTTTTTAATATGATGCCATCGGGTTCGGGTGAGGGAGGACGAAGCTTCAGGTGGACTGACTTGTTTGGAAGCTTTTCAAGTTGTAATTCCGAAGCTAGTGTTAACCAACCGGCCCGGGACTATGCCAACCCTGGTGAACCCGACGCGCCTATTTATCACCCGTTACAGGAGGACGGACAGAGGCGCCAAGAATTCTCTGACCGTCTTGGTATCAACAGTATAGGAAGTGATATGCCCGACGAAGTTCGGGAGTCAATTCTCAAAACTCACAATTCGATAGAACTGAAGATCGAGAAAGCCCTTCGTTCAGACAGGTTTTCCGAGGATTCCCTTATGGAGAAAAGGCATCAGATAAGGGGGGGTCCTCTTTTACCCTAA 2124 0.4496 MTTGSSVYSTSIHHFELYTEGFSVPAPSTYTSVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVVDRTASCSIRTLALLRAKNLDGFPFCGITPVKLILKKFGILLDEIGRVVSVGDGIARVYGLNEIQAGELVEFASGVKGIALNLKNENVGIVVFGSDTSFKEGGLIKRTGSIVDVPVGKDMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIRDRQTGKTTIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYLRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITVGQICLETELFYRGIRPAINIGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFSQKIPLIFLVGILLGEIYILNSFLSKALTAAGARALFSFLVKKGLPGRLAHSLGFILKILFPTQILNFFNMMPSGSGEGGRSFRWTDLFGSFSSCNSEASVNQPARDYANPGEPDAPIYHPLQEDGQRRQEFSDRLGINSIGSDMPDEVRESILKTHNSIELKIEKALRSDRFSEDSLMEKRHQIRGGPLLP 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03585 707 ProSitePatterns ATP synthase alpha and beta subunits signature. 475 484 IPR020003 GO:0005524
Vifa6g03585 707 Gene3D - 137 205 IPR023366 -
Vifa6g03585 707 Gene3D - 206 491 IPR027417 -
Vifa6g03585 707 CDD F1-ATPase_alpha_CD 205 487 IPR033732 GO:0032559
Vifa6g03585 707 FunFam ATP synthase subunit alpha, mitochondrial 205 491 - -
Vifa6g03585 707 SUPERFAMILY HydB/Nqo4-like 10 94 IPR029014 -
Vifa6g03585 707 Pfam Respiratory-chain NADH dehydrogenase, 49 Kd subunit 8 94 IPR001135 GO:0016651|GO:0048038|GO:0051287
Vifa6g03585 707 Gene3D - 2 97 IPR029014 -
Vifa6g03585 707 CDD ATP-synt_F1_alpha_N 138 203 - -
Vifa6g03585 707 Gene3D - 492 518 IPR038376 -
Vifa6g03585 707 Pfam ATP synthase alpha/beta chain, C terminal domain 491 517 IPR000793 GO:0015986
Vifa6g03585 707 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 134 205 IPR036121 GO:0046034|GO:1902600
Vifa6g03585 707 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 493 517 - -
Vifa6g03585 707 Pfam ATP synthase alpha/beta family, beta-barrel domain 138 203 IPR004100 GO:0046034|GO:1902600
Vifa6g03585 707 MobiDBLite consensus disorder prediction 688 707 - -
Vifa6g03585 707 NCBIfam F0F1 ATP synthase subunit alpha 136 517 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa6g03585 707 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 134 517 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa6g03585 707 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 260 484 IPR000194 GO:0005524
Vifa6g03585 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 490 IPR027417 -
Vifa6g03585 707 Hamap ATP synthase subunit alpha [atpA]. 114 624 IPR005294 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03585 Vifa-Chr6 1176726389 1176728579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03585 171 490 Primary Pumps ATPases(2) AT4G38510 26.807 3.16e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03585 K02132 - gmx:15308608 709.523