Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03581 ATGGGTTTTCCCGTCGGGTACACAGAGCTCTTGTTCCCAAAACTGGTCCTCCACCTTCTCTCCATCTTCACCTTCATCCGAAAACTCATCTCCCTCATCTTCTCCCATCTAGGCCTCCCCGATTTCATCGAACCCGACATTCCATGGCCCGAGACCTCAACCCGAACACCCGAATTCGAATCCGTTTCCGCTCTCCTCATTCGCGAAATTCTTCCGGTTGTCAAGTTCAACGAGCTACTGGACCTGGACCTGGACCCACCTGAAAGCTGCGCCGTCTGTCTCACTGAGTTCGACGAAAACGATGAGATCAGACGGTTAGCGAACTGCAGACACATTTTCCATCGAGGTTGTTTGGACCGTTGGATGGGATATGATCAGAGGACGTGTCCTTTGTGTAGAACTTCCTTTATACCTGATGATATGCAGACTGCTTTCAATGAGAGACTCTGGGCGGCTTCTGGGATTCCTGAATTTCACTCTGATGTTTCTCTTTTCTAG 498 0.5 MGFPVGYTELLFPKLVLHLLSIFTFIRKLISLIFSHLGLPDFIEPDIPWPETSTRTPEFESVSALLIREILPVVKFNELLDLDLDPPESCAVCLTEFDENDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTSFIPDDMQTAFNERLWAASGIPEFHSDVSLF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03581 165 ProSiteProfiles Zinc finger RING-type profile. 90 133 IPR001841 -
Vifa6g03581 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 140 IPR013083 -
Vifa6g03581 165 SMART ring_2 90 132 IPR001841 -
Vifa6g03581 165 Pfam Ring finger domain 89 133 IPR001841 -
Vifa6g03581 165 SMART ringv_2 89 133 IPR011016 GO:0008270
Vifa6g03581 165 SUPERFAMILY RING/U-box 80 140 - -
Vifa6g03581 165 PANTHER RING ZINC FINGER PROTEIN-RELATED 20 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03581 Vifa-Chr6 1174292496 1174292993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03581 1 154 C3H Transcription Factor Family AT1G63840 57.500 1.94e-58 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03581 K16281 - rcu:8287413 255.758